View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_54 (Length: 388)
Name: NF11538_high_54
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 31543641 - 31543285
Alignment:
| Q |
19 |
ttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaataaggtatttgc |
118 |
Q |
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| T |
31543641 |
ttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaataaggtatttgc |
31543542 |
T |
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| Q |
119 |
gactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaacaacaacgtgtt |
218 |
Q |
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| T |
31543541 |
gactcaataaccaaggggcgtttagtgggtttaccggtacaattgatgttatatcatctatgaggttcttgtctcaggcgtggcttaacaacaacatgtt |
31543442 |
T |
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| Q |
219 |
cgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacattctctatgcact |
318 |
Q |
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| T |
31543441 |
cgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacattcgctatgcact |
31543342 |
T |
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| Q |
319 |
ctctctagcttgaagaacatctctttggacaacaattttcttcaaggaccgatacct |
375 |
Q |
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| T |
31543341 |
ctctctagcttgaagaacatctctttggacatcaattttcttcaaggaccgatacct |
31543285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 378
Target Start/End: Original strand, 31551023 - 31551365
Alignment:
| Q |
37 |
ttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaataaggtatttgcgactcaataa-ccaaggg |
135 |
Q |
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| T |
31551023 |
ttgcatactgtttctctctctcacaacaacatccgtggaacacttcccctgtctcttggaaaatctgtagtaaggtatttacgactcaacaaaccaagac |
31551122 |
T |
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| Q |
136 |
gcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattccta |
235 |
Q |
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| T |
31551123 |
agattgaatgggtttacgggtacaattgaagtgatatcgtctatgagatttttgtctcaagcgtggcttaacaacaacgcgttcactggtacaattccta |
31551222 |
T |
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| Q |
236 |
acatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacattctctatgcactctctctagcttgaagaa |
335 |
Q |
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| T |
31551223 |
acatgtcaaattccactcatttgtttgatctccaacttcactcaaatggtttaataggtttggttccatcttcgttgttctctctccctagcttgaccaa |
31551322 |
T |
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| Q |
336 |
catctctttggacaacaattttcttcaaggaccgatacctatg |
378 |
Q |
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| T |
31551323 |
catctctttggacaacaataatcttgaaggaccaatacctatg |
31551365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 31534925 - 31534749
Alignment:
| Q |
88 |
tctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattct |
187 |
Q |
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||||||||| ||||| | ||| ||||||||| ||||| ||||||||| | ||||||||| |||| |||||| ||||||||||||||||| | |
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| T |
31534925 |
tctcttgggaaatctaaagtaaagtatttgcggttcaatgaccaaggggaatacagtgggttttcgggtagaattgacgttatatcatccatgagtaatt |
31534826 |
T |
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| Q |
188 |
tgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgat |
264 |
Q |
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| T |
31534825 |
tgtctcaggcgtggcttcagaacaacacattcacaggttcaatacccaacatgtccaattgcactcatttgtttgat |
31534749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 32357526 - 32357578
Alignment:
| Q |
316 |
actctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
368 |
Q |
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|||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32357526 |
actctccctaacttgaagaacatctctttggaccacaattttcttcaaggacc |
32357578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 32350958 - 32350881
Alignment:
| Q |
291 |
tggtttggttccacattctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
368 |
Q |
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||||||| |||||| |||| | | ||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
32350958 |
tggtttgattccaccttctttgttcactctccctaacttgaagagcatctctttggaccacaattttctttaaggacc |
32350881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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