View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_55 (Length: 386)
Name: NF11538_high_55
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 48019953 - 48019584
Alignment:
| Q |
1 |
ctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtgtaaccatgctgttctagttttcattagcttggagaatagtgttaatttgttc |
100 |
Q |
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| T |
48019953 |
ctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtgtaaccatgctgttctagttttcattagcttggagaatagtgttaatttgttc |
48019854 |
T |
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| Q |
101 |
ttggtttcatttttcagaggtttaagcaatccatgagagctattcaaggggcattgcttattgcttcttttgttcaaggaatgattggattttttggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48019853 |
ttggtttcatttttcagaggtttaagcaatccatgagagctattcaaggggcattgcttattgcttcttttgttcaaggaatgattggattttttggatt |
48019754 |
T |
|
| Q |
201 |
ctggggaatttttggaaggtagaatatgcatatgaaatttcatagtgtcttttaatgcatttagcttctttgatgaaatcagttctagttttggtagtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48019753 |
ctggggaatttttggaaggtagaatatgcatatgaaatttcatagtgtcttttaatgcatttagcttctttgatgaaatcagttctagttttggtagtag |
48019654 |
T |
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| Q |
301 |
aataactcaaatactaaattatatttaatgtatttattcatattgcaggtttttcagccctctctgtgct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48019653 |
aataactcaaatactaaattatatttaatgtatttattcatattgcaggtttttcagccctctcagtgct |
48019584 |
T |
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