View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_high_57 (Length: 372)
Name: NF11538_high_57
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 1452272 - 1452634
Alignment:
| Q |
5 |
gagagagataaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctcc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1452272 |
gagagagataaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctcc |
1452371 |
T |
|
| Q |
105 |
gttcggttaggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaattg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1452372 |
gttcggttaggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaattg |
1452471 |
T |
|
| Q |
205 |
atcgatgtattttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatatggttcgagagtaaattgatgaaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
1452472 |
atcgatgtattttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatatggttcgagagtaaattaatttaa |
1452571 |
T |
|
| Q |
305 |
gaatgataatttaagaactaaatttaagaatggttccatttgctttgatacctctgtgctgct |
367 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1452572 |
gaacgataatttaagaactaaatttaagaatggttccatttgctttgatacctcggtgctgct |
1452634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 353
Target Start/End: Original strand, 1453751 - 1453943
Alignment:
| Q |
162 |
taagaggggaaccattgttattaatatattatggactaaattgatcgatgtattttctaatactttatggactaaattgatgaatttc-tgtactttaag |
260 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||| || ||||||| | |
|
|
| T |
1453751 |
taagagggggatcattgttattaagatattatggaccaaattgat-aatcgattttctaatactttatggactaaattgacaaatatcacctactttagg |
1453849 |
T |
|
| Q |
261 |
tattagttattatatttatatggttcgagagtaaattgatgaaagaatgataa-tttaagaactaaatttaagaatggttccatttgctttgat |
353 |
Q |
| |
|
||| |||||| ||||||||||||| |||| ||||||| | ||||||||||| ||||||||| |||| |||||||| |||| || |||||||| |
|
|
| T |
1453850 |
tatcggttattttatttatatggttagagactaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttgat |
1453943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University