View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_61 (Length: 362)
Name: NF11538_high_61
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 36743415 - 36743255
Alignment:
| Q |
18 |
cttatgatttggtccgtcacaataaaaagacgttgaagcccgattatacaactcatgcaggggtctgagttcaaactcaagatttttcatttctttacac |
117 |
Q |
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| T |
36743415 |
cttatgatttggtccgtcacaataaaaagacgttgaagcccgattatacaactcatgcaggggtctgagttcaaactcaagatttttcatttctttacac |
36743316 |
T |
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| Q |
118 |
ttggagtgtgtaaatcttgtttttaatggttaagtgtatacatatagacatctagtcattag |
179 |
Q |
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| T |
36743315 |
tt-gagtgtgtaaatcttgtttttgatggttaagtgtatacatatagacatctagtcattag |
36743255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 36743200 - 36743072
Alignment:
| Q |
234 |
gaggagagattatatgtgtaagtattattattactgtcagttttggtggcactgatcaactggaggccaacactacggcctaagatagcagtagcaccat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743200 |
gaggagagattatatgtgtaagtattattattactgtcagttttggtggcactgatcaactggaggccaacactacggcctaagatagcagtagcaccat |
36743101 |
T |
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| Q |
334 |
caatgacaccaccaacaacgtctctaaca |
362 |
Q |
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| T |
36743100 |
caatgacaccaccaacaacgtctctaaca |
36743072 |
T |
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