View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_high_63 (Length: 360)
Name: NF11538_high_63
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_63 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 18482344 - 18482000
Alignment:
| Q |
1 |
tcacagaagatgattggtttgggtgataaatcaaatggtttctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18482344 |
tcacataagatgattggtttgggtgataaatcaaatggtctctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagt |
18482245 |
T |
|
| Q |
101 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18482244 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttacttagtctcaaactgtgtttgatagttctagaatacctgaatctgc |
18482145 |
T |
|
| Q |
201 |
attgtggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgat |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18482144 |
attgtggcatttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgat |
18482045 |
T |
|
| Q |
301 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18482044 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
18482000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 4 - 345
Target Start/End: Complemental strand, 38847998 - 38847657
Alignment:
| Q |
4 |
cagaagatgattggtttgggtgataaatcaaatggtttctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagtctt |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| |||||| | |||||||||| ||| |||||| | |||| | ||||| ||| ||||| ||| |
|
|
| T |
38847998 |
cagaggatgattggtttgggtgataaatcagatggtctctacaaactgtctatgcattttgtcaatcagcaattgcaacttcataatagttttaagcctt |
38847899 |
T |
|
| Q |
104 |
taccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctgcatt |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| ||||||| || || ||||| |||||| ||| |||| |||||||||||||||||||| || |
|
|
| T |
38847898 |
taccaaataaagtggcacatagtgcttgtaatatttctacttctagtctttctaagtcttcaactgttttttatagctctagaatacctgaatctgcctt |
38847799 |
T |
|
| Q |
204 |
gtggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgatgtt |
303 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| || |||||| || ||||||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
38847798 |
atggcatttcaggcttggtcatttgtctaatcaaagattatctactatgagtcgtttgtatccatctatcattgttgataataaagctgcatgtgatatt |
38847699 |
T |
|
| Q |
304 |
tgtcattttgccagacataagaaattgcccttttcccatagt |
345 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
38847698 |
tgtcactttgcaagacataagaaattgccctttccccatagt |
38847657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 21030317 - 21029973
Alignment:
| Q |
1 |
tcacagaagatgattggtttgggtgataaatcaaatggtttctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
21030317 |
tcacagaagatgattggtttgggtgataaatcaaatggtctctacacattgtctatgcagtttcctaatcagaagatgcatccttatagtagtcttaagt |
21030218 |
T |
|
| Q |
101 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21030217 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgacagttctagaatacctgaatctgc |
21030118 |
T |
|
| Q |
201 |
attgtggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgat |
300 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21030117 |
attgtggcatttccggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccttctattattgttgataataaagctgcatgtgat |
21030018 |
T |
|
| Q |
301 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21030017 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
21029973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 28348234 - 28348178
Alignment:
| Q |
276 |
tgttgataataaagctgcatgtgatgtttgtcattttgccagacataagaaattgcc |
332 |
Q |
| |
|
|||||||||||||| ||| ||||| ||| ||| ||||||| ||||||||||||||| |
|
|
| T |
28348234 |
tgttgataataaaggtgcctgtgacatttatcactttgccaaacataagaaattgcc |
28348178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 28520398 - 28520054
Alignment:
| Q |
1 |
tcacagaagatgattggtttgggtgataaatcaaatggtttctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
28520398 |
tcacaaaagatgattggtttgggtgataaatcaaatggtctctatacattgtctatgcagtttcataatcaaaagatgcatcttcatagcagtcttaagt |
28520299 |
T |
|
| Q |
101 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctgc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28520298 |
ctttaccaaataaaaaggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctac |
28520199 |
T |
|
| Q |
201 |
attgtggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520198 |
attgtggcacttcaggcttggtcatttgtctaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgat |
28520099 |
T |
|
| Q |
301 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520098 |
gtttgtcattttgccagacataagaaattgcccttttcccatagt |
28520054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 6342002 - 6342093
Alignment:
| Q |
223 |
catttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgatgtttgtcattttgc |
314 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| | ||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||| |
|
|
| T |
6342002 |
catttgtcaaatcaaagattgtccaaaatgcataatttgtatccctctatttctgttgataataaagctacttgtgacatatgtcattttgc |
6342093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 146 - 345
Target Start/End: Original strand, 42139203 - 42139402
Alignment:
| Q |
146 |
ctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatctgcattgtggcacttcaggcttggtcatttgtcgaatcatagattgtc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42139203 |
ctagttttactcagtctcaaactgtgtttgacagttctagaatacctgaatctgcattgtggcatttccggcttggtcatttgtcgaatcatagattgtc |
42139302 |
T |
|
| Q |
246 |
ctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgatgtttgtcattttgccagacataagaaattgcccttttcccatagt |
345 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42139303 |
ctctatgactcatttgtatccttctattattgttgataataaagctgcatgtgatgtttgtcattttgccagacataagaaattgcccttttcccatagt |
42139402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 42135423 - 42135573
Alignment:
| Q |
1 |
tcacagaagatgattggtttgggtgataaatcaaatggtttctacacattgtctatgcagtttcctaatcagaagatgcatcctcatagcagtcttaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
42135423 |
tcacagaagatgattggtttgggtgataaatcaaatggtctctacacattgtctatgcagtttcctaatcagaagatgcatccttatagtagtcttaagt |
42135522 |
T |
|
| Q |
101 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagtt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42135523 |
ctttaccaaataaaatggcacatagtgcttgtactatttctgattctagtt |
42135573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 329
Target Start/End: Complemental strand, 17479988 - 17479758
Alignment:
| Q |
98 |
agtctttaccaaataaaatggcacatagtgcttgtactatttctgattctagttttactcagtctcaaactgtgtttgatagttctagaatacctgaatc |
197 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||||||| ||||| ||||| ||||||||| |||||||| ||| ||| | |||||||| ||||||||||| |
|
|
| T |
17479988 |
agtctttacctaataaagtagcacacagtgcttgtaatatttttgattttagttttaccaagtctcaagttgtttttaacagttctaggatacctgaatc |
17479889 |
T |
|
| Q |
198 |
tgcattgtggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgt |
297 |
Q |
| |
|
| |||||||| |||||||||||||||||||| ||||| ||| | || |||||| |||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
17479888 |
gaccttgtggcatttcaggcttggtcatttgtccaatcaaagactatcttctatgtgtcatttgtatccatctattattgttgataataaaccagcatgt |
17479789 |
T |
|
| Q |
298 |
gatgtttgtcattttgccagacataagaaatt |
329 |
Q |
| |
|
||||||||||| |||| || ||||||||||| |
|
|
| T |
17479788 |
gatgtttgtca-cttgctagccataagaaatt |
17479758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 5386626 - 5386571
Alignment:
| Q |
259 |
ttgtatccctctattattgttgataataaagctgcatgtgatgtttgtcattttgc |
314 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5386626 |
ttgtacccttctatttttgttgataataaagctacatgtgatatttgtcattttgc |
5386571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 18834445 - 18834321
Alignment:
| Q |
205 |
tggcacttcaggcttggtcatttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgatgttt |
304 |
Q |
| |
|
|||||||||| | | ||||||||||| ||||| ||||| || |||| | | | ||||| || ||||| || ||||||||||||| || |||||||||| |
|
|
| T |
18834445 |
tggcacttcaagttaggtcatttgtcaaatcaaagattatcatctacgtgttagttgtacccttctataatcgttgataataaagtagcttgtgatgttt |
18834346 |
T |
|
| Q |
305 |
gtcattttgccagacataagaaatt |
329 |
Q |
| |
|
||| |||||| | ||||||||||| |
|
|
| T |
18834345 |
gtcgttttgctcgtcataagaaatt |
18834321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 28017031 - 28017122
Alignment:
| Q |
223 |
catttgtcgaatcatagattgtcctctatgactcatttgtatccctctattattgttgataataaagctgcatgtgatgtttgtcattttgc |
314 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| | ||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||| |
|
|
| T |
28017031 |
catttgtcaaatcaaagattgtccaaaatgcataatttgtatccctctatttctgttgataataaagctacttgtgacatatgtcattttgc |
28017122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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