View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_66 (Length: 357)
Name: NF11538_high_66
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_66 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 38946154 - 38945825
Alignment:
| Q |
17 |
caacaatgaccaatcttcccacctccaacccattcttattaacctagcaaaccattatgacgattcttttttgtagagataacaatcactgttaaacaca |
116 |
Q |
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| T |
38946154 |
caacaatgaccaatcttcccacctcaaacccattcttattaacctagcaaaccgttatgacgacttctttttgtagagataacaaccactattaaacaca |
38946055 |
T |
|
| Q |
117 |
agaaaatcgtagttgtggtgactccaccacaaacacctttggtgccgattccagcacagatggtggtggtagctccaccaaccactatatcagtgaaaga |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38946054 |
agaaaaccgtagttgtggtgactccaccacaaacacctttggtgccgattccagcacagatggtggtggtggctccaccaaccactatatcagtgaaaga |
38945955 |
T |
|
| Q |
217 |
accgatcacacttcataccattaatgaaaaggatgaaattttgtccnnnnnnntaaatatactgtgaatgtggggatggactcgtagggaaaacatgtgt |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38945954 |
accgatcacacttcataccattaatggaaaggatgaaattttgtccaaaaaaataaatatactgtgaatgtggggatggactcgtagggcaaacatgtgt |
38945855 |
T |
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| Q |
317 |
ggttgtgtgcaggattgtctagatgttctt |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38945854 |
ggttgtgtgcaggattgtctagatgttctt |
38945825 |
T |
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