View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_high_7 (Length: 747)
Name: NF11538_high_7
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_7 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0067 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 19 - 727
Target Start/End: Original strand, 39753 - 40465
Alignment:
| Q |
19 |
taaaatatattattgaagcatgtaatgttctgattcatatttaatgaagtagcctagtattttgattctgataatcataagctgaaagtaaaaagtatga |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
39753 |
taaaacatattattgaagcatgtaatgttctgattcatatttaatgaagtagcctagtattttgattctgataaacataaactcaaagtaaaaagtatga |
39852 |
T |
|
| Q |
119 |
caattagaatcagaatacaccatagaaaacaaagaacttctccggtggtgacttataaaaacaacaaaagcagcacaacagtcatagttgatccttcaga |
218 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39853 |
caatgagaatcaaaatacagcatagaaaacaaagaacttctccggtggcgacttccaaaaacaacaaaagcagcacaaca-tcatagttgatctttcaga |
39951 |
T |
|
| Q |
219 |
acttttttgtcca-----tctccattcccacacttctccagtgttgagtcattgtgattttactaatttgaaatccttgaggttgttggaacttggaatc |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39952 |
acttttttgtccattccatctccattcccacacttctccaatggtgagtcatagtgattttactaatttgaaatccttgaggttgttggaacttggaatc |
40051 |
T |
|
| Q |
314 |
ctcaacactcactcccccatattgatcgttaatatcctttcactctgtcattgatctactaactagcagcagatcctcacaccgacgaggtcttctctga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40052 |
ctcaacactcactcccccatattgatcgttaatatcctttcactctgtcattgatctactaactagcagcagatcctcacaccgacgaggtcttctctga |
40151 |
T |
|
| Q |
414 |
acttataactctagtaacggacgattgtgtccaataagcttatttccgatgctaaaatcagctgtgccggtatgggccgaagcccatccaaggatacgtg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152 |
acttataactctagtaacggacgattgtgtccaataagcttatttccgatgctaaaatcagctgtgccggtatgggccgaagcccatccaaggatacgtg |
40251 |
T |
|
| Q |
514 |
ttaactcaagtgcgcaggtaaacattttcatcagttaactcatcattttcatcatcacgtagaatttgcttcgtcttcattaactctatcatgaattttg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40252 |
ttaactcaagtgcgcaggtaaacattttcatcagttaactcatcattttcatcatcacgtagaatttgcttcgtcttcattaactctatcatgaattttg |
40351 |
T |
|
| Q |
614 |
catatactgatatttgatcaatagcttcaacaaatgacatgttgactttcaacttggcgatcatttccataaaaaatttcgaaactgcgcccttcttctt |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40352 |
catatactgatatttgatcaatagcttcaacaaatgacatgttgacttgcaacttggcgattatttccataaaaaatttcgaaactgcgcccttcttctt |
40451 |
T |
|
| Q |
714 |
tcttcttgcttaag |
727 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40452 |
tcttcttgcttaag |
40465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University