View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_71 (Length: 340)
Name: NF11538_high_71
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 31108328 - 31108006
Alignment:
| Q |
1 |
gagtatcaactgaggaaggtgaagaagaaaggaagaatagggtatagcatcagcaattttcttttctatgcttatatatactttttgatgcttgttgagt |
100 |
Q |
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| T |
31108328 |
gagtatcaactgaggaaggtgaagaagaaaggaagaatagggtatagcatcagcaattttattttctatgcttatatatactttttgatgcttgttgagt |
31108229 |
T |
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| Q |
101 |
tttaattttggtttatcttaatattaagttgtcccttgagaannnnnnngctttactttgatgtttttgtaactggtaaatatctcatgtatatatgatg |
200 |
Q |
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| T |
31108228 |
tttaatttcggtttatcttcatattaagttgtcccttgagaatttttttgctttactttgatgtttttgtaactggtaaatatctcatgtattgatgatg |
31108129 |
T |
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| Q |
201 |
gaagtggtataaaacaaatgaatagttttttcttcttttgatggaagttgtccctcgtatgatttgaatgacatatagcagaaaacagaaattaactaac |
300 |
Q |
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| T |
31108128 |
gaagtggtataaaacaaatgaatagttttttcttcttttgatggaagttgtccctcgtatgatttgaatgacatataacagaaaacagaaattaactaac |
31108029 |
T |
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| Q |
301 |
tcagtttatgtatctgaggtttg |
323 |
Q |
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|||||| |||||||||||||||| |
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| T |
31108028 |
tcagttcatgtatctgaggtttg |
31108006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 31105115 - 31105078
Alignment:
| Q |
32 |
gaagaatagggtatagcatcagcaattttcttttctat |
69 |
Q |
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| T |
31105115 |
gaagaataggatatagcatcagcagttttcttttctat |
31105078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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