View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_75 (Length: 328)
Name: NF11538_high_75
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_75 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 46636375 - 46636675
Alignment:
| Q |
20 |
acaaatagttttgtactaggtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcatttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46636375 |
acaaatagttttgtactaggtttgtttatttttcggaagaattttactcatataaaacaatttatcgagaacaaagggatgggggaaatgctttcatttt |
46636474 |
T |
|
| Q |
120 |
actatggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccgg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
46636475 |
actatggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtatgataggacataacctttttgccgg |
46636574 |
T |
|
| Q |
220 |
accgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaactatgtctcatcttcatct |
319 |
Q |
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| T |
46636575 |
accgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaactatgtctcatcttcatct |
46636674 |
T |
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| Q |
320 |
c |
320 |
Q |
| |
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| |
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| T |
46636675 |
c |
46636675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 46617678 - 46617964
Alignment:
| Q |
21 |
caaatagttttgtactaggtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcatttta |
120 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
46617678 |
caaatagttttgaactaggtttgtttatttttgggaagaattttactcagataaaacgattcatcgagaacaaagggatgggggaaatactttcatttta |
46617777 |
T |
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| Q |
121 |
ctatggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccgga |
220 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
46617778 |
ctatggaaggttttacaaaactgatggatatcatagatggtcgaagtgcaggaagaaaaaagggagaaagtgtatgataggacataacctttttgccgga |
46617877 |
T |
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| Q |
221 |
ccgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaactatgtc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
46617878 |
ccgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaaaatgctctgtcacaggtattcaactatgtc |
46617964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 46643962 - 46643703
Alignment:
| Q |
20 |
acaaatagttttgtactaggtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcatttt |
119 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||| |||||| | |||||| ||| || ||||||||| ||||||||||||| ||| |||||| |
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| T |
46643962 |
acaaatagctttgtactaggtttgtttatttttgggaagaactttactaagataaaaagattcatagagaacaaacggatgggggaaatacttacatttt |
46643863 |
T |
|
| Q |
120 |
actatggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccgg |
219 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||| | || ||||||||||| |
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| T |
46643862 |
actatggaaagttttacgaaactgatggatattgtagatggtcggagtgcaggaaattaaaagggagaaaatgtataatagggaagaaactttttgccgg |
46643763 |
T |
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| Q |
220 |
accgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaaga |
279 |
Q |
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| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
46643762 |
agcgaggcaacaagaactattatctcgcttgattcctcatgtctctgacgaatctcaaga |
46643703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 46629068 - 46629331
Alignment:
| Q |
39 |
gtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcattttactatggaaagttttacaa |
138 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46629068 |
gtttgtttatttttgggaagaattttactccgataaaaagattcatcgagaacaaagggatgggggaaatactttcattttactatggaaagttttacaa |
46629167 |
T |
|
| Q |
139 |
aactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccggaccgaggcaacatgaacta |
238 |
Q |
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||||||||||||| |||||||||| |||||| |||| ||| ||||||||||||| ||| ||| | || |||||| | ||||| || ||| ||||| || |
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| T |
46629168 |
aactgatggatattgtagatggtcggagtgcatgaagttaaaggggagaaaatgtatgattgggaagaaactttttactggaccaagacaagatgaatta |
46629267 |
T |
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| Q |
239 |
ttgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaact |
302 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||| |
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| T |
46629268 |
ttatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaact |
46629331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 46177307 - 46177030
Alignment:
| Q |
25 |
tagttttgtactaggtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcattttactat |
124 |
Q |
| |
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||||||| |||| ||||||||||| ||| |||||||||||| |||||||||| ||| | ||||||||| ||||||||| || || |||||||||||| |
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| T |
46177307 |
tagttttctacttggtttgtttatgtttgggaagaattttattcaaataaaaagattcttagagaacaaattgatgggggagatactctcattttactat |
46177208 |
T |
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| Q |
125 |
ggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccggaccga |
224 |
Q |
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||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | ||||||| || ||| || || |||||||| ||||||| |
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| T |
46177207 |
ggagagttttacaaaactgaaggatatcgtagatggtcgaagtgcaggaggaaaaaaggggggaaatgtatgacaggacagaaactttttgctggaccga |
46177108 |
T |
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| Q |
225 |
ggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaact |
302 |
Q |
| |
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||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||| || ||| |||||||||||||| |
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| T |
46177107 |
ggcaacaagaacttttgtctcgcttgattactcatgtctctgaagaatcgcaagatactttgttacaggtattcaact |
46177030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 15770359 - 15770077
Alignment:
| Q |
20 |
acaaatagttttgtactaggtttgtttatttttcggaagaattttactcaaataaaacaatttatcgagaacaaagggatgggggaaatgctttcatttt |
119 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||| |||||||||||| || |||||| ||| | || |||||| ||||||||||||| || ||||||| |
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| T |
15770359 |
acaaaaagttttctacttggtttgtttatttttgggaagaattttatgcagataaaaagattcttagataacaaacggatgggggaaatactctcatttt |
15770260 |
T |
|
| Q |
120 |
actatggaaagttttacaaaactgatggatatcttagatggtcgaagtgcaggaagaaaaaagggagaaaatgtaagatagggcataacctttttgccgg |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| | ||| ||| |||||| || || |||||| || |
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| T |
15770259 |
actatggaaagttttacaaaactgatggatatcgtagatggtcagagtgcaggaaaaaaaagggggggaaacgtatgataggacagaaactttttagtgg |
15770160 |
T |
|
| Q |
220 |
accgaggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaact |
302 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
15770159 |
accgaggcaacatgaacttttgtctcgcttgattactcatgtatctgaagaatcgcaagatactctgtcacaggtattcaact |
15770077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 18376272 - 18376224
Alignment:
| Q |
225 |
ggcaacatgaactattgtctcgcttgattcctcatgtctctgaagaatc |
273 |
Q |
| |
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|||||||||||| | | |||||||||||||||||||| || |||||||| |
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| T |
18376272 |
ggcaacatgaacaactatctcgcttgattcctcatgtatccgaagaatc |
18376224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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