View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_78 (Length: 319)

Name: NF11538_high_78
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_78
NF11538_high_78
[»] chr1 (5 HSPs)
chr1 (130-300)||(235421-235592)
chr1 (2-287)||(8814023-8814311)
chr1 (2-237)||(251114-251355)
chr1 (2-244)||(247022-247267)
chr1 (1-49)||(235376-235424)
[»] chr6 (6 HSPs)
chr6 (1-84)||(7012989-7013072)
chr6 (1-84)||(9170971-9171054)
chr6 (1-71)||(7029982-7030052)
chr6 (1-69)||(212966-213034)
chr6 (1-84)||(7025925-7026008)
chr6 (13-84)||(9159374-9159445)
[»] chr5 (2 HSPs)
chr5 (1-96)||(33541812-33541907)
chr5 (1-73)||(18571271-18571343)
[»] chr3 (1 HSPs)
chr3 (1-161)||(9494619-9494782)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 235421 - 235592
Alignment:
Q  130 tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac 229  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  235421 tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac 235520  T
Q  230 actactggttcttctccagtacagttcaatgagccgacaatgataggg-ttttttccatgggacatgacagc 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  235521 actactggttcttctccagtacagttcaacgagccgacaatgatagggtttttttccatgggacatgacagc 235592  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 8814311 - 8814023
Alignment:
Q  2 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcat 101  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| ||||||| |||| |||||| | ||||| || ||||    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  102 caggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataag 201  Q
    | || | ||||||||||||| | |||||||| || |||||||||  ||| ||||||||| |||| || ||||| || ||| | |||||| |||||||||     
T  8814211 ccggtccaacagtaacagtctgtccagttttgtctaccacataacactgacctttgaaagcacggatatctccaaagtagactgacatttcaggaataaa 8814112  T
Q  202 tttccaattctcatcgccacatttcaacactac---tggttcttctccagtacagttcaatgagccgacaatgatagggttttttccat 287  Q
     ||||||||||||||||| ||||| ||||||||   | ||||||||||  ||||||| |||||| |||| |||||||| || |||||||    
T  8814111 cttccaattctcatcgccgcatttgaacactaccagttgttcttctcctttacagttaaatgaggcgacgatgataggtttatttccat 8814023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 251355 - 251114
Alignment:
Q  2 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcat 101  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||  ||| |||||| ||||||||||||| |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  102 caggac------aaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccagg 195  Q
    |||| |       ||||||||| ||||| ||||| || || ||| |||||||  ||||||||||||||| ||||||||| ||||| ||||||||   |||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataaggtcggcctttgaaaacacaaatgtctccaaaataagccgacatgttagg 251156  T
Q  196 aataagtttccaattctcatcgccacatttcaacactactgg 237  Q
     |||   |||||||||||||| || ||||| |||||||||||    
T  251155 tatagccttccaattctcatcaccgcatttgaacactactgg 251114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 247022 - 247267
Alignment:
Q  2 taaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatca- 100  Q
    |||||||||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||     
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  101 --tcaggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaat 198  Q
      || || | ||    ||| ||||  |||||||| || ||| |||||||  ||||||||||||||| |||||||||||||||  |||||||   ||| ||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataaggtcggcctttgaaaacacaaatgtctcctaaataaaccgacatgtgaggtat 247221  T
Q  199 aagtttccaattctcatcgccacatttcaacactactggttcttct 244  Q
    |   |||||||||||||| || |||||||||| | |||||| ||||    
T  247222 agccttccaattctcatcaccgcatttcaacaatgctggttgttct 247267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 235376 - 235424
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaattta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  235376 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaattta 235424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7012989 - 7013072
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 84  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||| || ||||| ||||||||||||| | |||| |||||    
T  7012989 ataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9170971 - 9171054
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 84  Q
    |||||| || |||||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | ||||||||||    
T  9170971 ataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaactaa 9171054  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7029982 - 7030052
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaag 71  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| | ||  ||||||||||||||||    
T  7029982 ataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaag 7030052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 213034 - 212966
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaa 69  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| ||  | |||||| |||||||    
T  213034 ataaacatctactaacaacaaatcaccctcgctctccactaagaatttcatgcctccaccatcaaccaa 212966  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7025925 - 7026008
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 84  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| || ||||| || |||| ||||| | |||| |||||    
T  7025925 ataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 9159445 - 9159374
Alignment:
Q  13 taacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 84  Q
    |||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | |||| |||||    
T  9159445 taacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccactaa 9159374  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33541812 - 33541907
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtgga 96  Q
    |||||||||  |||||||||||||||| | |||||||||||||||||| |  || |||||||||||||||||| |||| |||||| | ||||||||    
T  33541812 ataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga 33541907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18571271 - 18571343
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagat 73  Q
    |||||| || |||||||||| ||| || ||||||||||| |||||||| || | ||||||| |||||||||||    
T  18571271 ataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagat 18571343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9494782 - 9494619
Alignment:
Q  1 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccacc---aaccaaagatacagcaactaaccggacagtggaa 97  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||| |||||   |||||||||| |||| ||||||  || |||| |     
T  9494782 ataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtgaag 9494683  T
Q  98 tcatcaggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaa 161  Q
    |||||  | | || |||| | ||||| |||||||| |  |||||||||||| | ||||||||||    
T  9494682 tcatccagtccaagagtagctgtccgtccagttttgtgtaccacataaggccgccctttgaaaa 9494619  T

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