View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_8 (Length: 723)

Name: NF11538_high_8
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_8
NF11538_high_8
[»] chr4 (12 HSPs)
chr4 (14-284)||(34140950-34141220)
chr4 (14-284)||(34137287-34137557)
chr4 (14-284)||(34133376-34133646)
chr4 (14-272)||(34127115-34127373)
chr4 (284-360)||(34140342-34140418)
chr4 (644-723)||(34140247-34140326)
chr4 (502-617)||(40333269-40333383)
chr4 (366-420)||(40333025-40333079)
chr4 (463-503)||(40333163-40333203)
chr4 (456-494)||(40333076-40333114)
chr4 (445-485)||(6020123-6020164)
chr4 (445-485)||(48583854-48583895)
[»] chr7 (3 HSPs)
chr7 (360-494)||(13066753-13066886)
chr7 (500-620)||(13066481-13066600)
chr7 (463-503)||(13066664-13066704)
[»] chr8 (2 HSPs)
chr8 (500-619)||(17074356-17074474)
chr8 (500-619)||(17573796-17573914)
[»] chr5 (1 HSPs)
chr5 (424-485)||(41312972-41313034)
[»] chr2 (1 HSPs)
chr2 (442-476)||(13557696-13557730)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 34141220 - 34140950
Alignment:
Q  14 agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141220 agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct 34141121  T
Q  114 tagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc 213  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141120 tagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc 34141021  T
Q  214 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141020 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 34140950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 34137557 - 34137287
Alignment:
Q  14 agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct 113  Q
    ||||||||||||||  |||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  34137557 agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact 34137458  T
Q  114 tagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc 213  Q
    |||| ||||| |||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  34137457 tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc 34137358  T
Q  214 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 284  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  34137357 taaattgttctttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggtt 34137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 34133646 - 34133376
Alignment:
Q  14 agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct 113  Q
    ||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||||  | ||| ||| ||||||||||||||||| |||||||| ||    
T  34133646 agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact 34133547  T
Q  114 tagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc 213  Q
    | || |||||||||||||||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||| ||||| |||||| |    
T  34133546 tggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttc 34133447  T
Q  214 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  34133446 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggtt 34133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 34127373 - 34127115
Alignment:
Q  14 agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct 113  Q
    ||||||||||| ||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | ||| |||||||||||| ||||    
T  34127373 agaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagct 34127274  T
Q  114 tagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc 213  Q
    | || ||| ||||||||||||||||||| || ||||| |||||| |||||||||||||||  |||||||||||| | ||||| || ||||||||||||||    
T  34127273 tggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgc 34127174  T
Q  214 tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatca 272  Q
    |||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||    
T  34127173 tagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatca 34127115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
Q  284 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140418 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 34140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 34140326 - 34140247
Alignment:
Q  644 gtccaatttatgtgtcaaaatataatttaggattgcaattcaattcaatgagtattcaaaggtagattaacttttaaact 723  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140326 gtccaatttctgtgtcaaaatataatttaggattgcaattcaattcaatgagtattcaaaggtagattaacttttaaact 34140247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 502 - 617
Target Start/End: Original strand, 40333269 - 40333383
Alignment:
Q  502 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgtcg 601  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||| |||||||| ||||||||||||||||||    
T  40333269 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgttgtgtaaatatgacgacaaattttgtcg 40333367  T
Q  602 tgtattttagcatttt 617  Q
    ||||||||||||||||    
T  40333368 tgtattttagcatttt 40333383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
Q  366 ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 420  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40333025 ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg 40333079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 40333163 - 40333203
Alignment:
Q  463 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 503  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40333163 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 40333203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 40333076 - 40333114
Alignment:
Q  456 tttgtttatagtatatattaaaaaacaatgctaccaaag 494  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40333076 tttgtttatagtatatattaaaaaacaatgttatcaaag 40333114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 485
Target Start/End: Original strand, 6020123 - 6020164
Alignment:
Q  445 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 485  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  6020123 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 6020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 48583895 - 48583854
Alignment:
Q  445 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 485  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  48583895 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 48583854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 360 - 494
Target Start/End: Complemental strand, 13066886 - 13066753
Alignment:
Q  360 agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttgctgtattattagttttctttcagtttattgatgcttttg 459  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgttgtattattag-tttctttcagtttattgatgcttttg 13066788  T
Q  460 tttatagtatatattaaaaaacaatgctaccaaag 494  Q
    |||||||||||||||||||||||||| || |||||    
T  13066787 tttatagtatatattaaaaaacaatgttatcaaag 13066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 500 - 620
Target Start/End: Complemental strand, 13066600 - 13066481
Alignment:
Q  500 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 599  Q
    ||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||||||||||||||| |||||||||||||    
T  13066600 gtggaggaaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgtcgtgtaaatctgtcgacaaattttgt 13066502  T
Q  600 cgtgtattttagcattttcct 620  Q
    |||||||||||||||||||||    
T  13066501 cgtgtattttagcattttcct 13066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 503
Target Start/End: Complemental strand, 13066704 - 13066664
Alignment:
Q  463 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 503  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  13066704 atagtatatattaaaaaacaatgctaccaaagaaatggtgg 13066664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 619
Target Start/End: Complemental strand, 17074474 - 17074356
Alignment:
Q  500 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 599  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17074474 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17074376  T
Q  600 cgtgtattttagcattttcc 619  Q
    ||||||||||| ||||||||    
T  17074375 cgtgtattttaacattttcc 17074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 619
Target Start/End: Original strand, 17573796 - 17573914
Alignment:
Q  500 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 599  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17573796 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17573894  T
Q  600 cgtgtattttagcattttcc 619  Q
    ||||||||||| ||||||||    
T  17573895 cgtgtattttaacattttcc 17573914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 41312972 - 41313034
Alignment:
Q  424 tattattagttttctttcagtttattgatgcttttgtttatagta-tatattaaaaaacaatg 485  Q
    ||||| ||| |||||||  | |||||||||||||||| ||||||| |||||||||||||||||    
T  41312972 tattaatagatttctttatggttattgatgcttttgtatatagtagtatattaaaaaacaatg 41313034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 476
Target Start/End: Complemental strand, 13557730 - 13557696
Alignment:
Q  442 agtttattgatgcttttgtttatagtatatattaa 476  Q
    ||||||||||||||||||| |||||||||||||||    
T  13557730 agtttattgatgcttttgtatatagtatatattaa 13557696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University