View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_82 (Length: 307)
Name: NF11538_high_82
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_82 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 14176643 - 14176909
Alignment:
| Q |
34 |
attatacattctgttaatcaaaatgaacatttacattaaaaggttcgttaatattgtcatatcaatcgttcaatatctcatttattgtagtttcaatacc |
133 |
Q |
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| T |
14176643 |
attatacattctgttaatcaaaatgaacatttgcattaaaaggttcgttaatatcgtcatatcagtcgttcaatatctcacttattgtagtttcaatacc |
14176742 |
T |
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| Q |
134 |
tataaatatttac--ttttttgagggaaaataaatatttacttattataatatcatatctaaaagagagttattattttgactaaccaatacataagtaa |
231 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176743 |
tataaatatttacttttttttgagggacaataaatatttacttattatcatatcata--taaaagagagttattattttgactaaccaatacataagtaa |
14176840 |
T |
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| Q |
232 |
aaaacttttatattttttgatatattgaagctcaacaaattgatcatagcgaaaaggagatctctgctc |
300 |
Q |
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| T |
14176841 |
aaaacttttaaattttttgatatattgaagctcatcaaattgatcacagcgaaaaggagatctctgctc |
14176909 |
T |
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