View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_9 (Length: 680)

Name: NF11538_high_9
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_9
NF11538_high_9
[»] chr4 (11 HSPs)
chr4 (18-331)||(34140950-34141263)
chr4 (18-331)||(34137287-34137600)
chr4 (18-331)||(34133376-34133689)
chr4 (43-319)||(34127115-34127391)
chr4 (510-653)||(40333163-40333306)
chr4 (331-407)||(34140342-34140418)
chr4 (413-467)||(40333025-40333079)
chr4 (503-541)||(40333076-40333114)
chr4 (492-532)||(6020123-6020164)
chr4 (492-532)||(48583854-48583895)
chr4 (409-453)||(48583945-48583989)
[»] chr7 (2 HSPs)
chr7 (510-653)||(13066561-13066704)
chr7 (407-541)||(13066753-13066886)
[»] chr8 (2 HSPs)
chr8 (518-653)||(17074435-17074569)
chr8 (518-653)||(17573701-17573835)
[»] chr5 (1 HSPs)
chr5 (471-532)||(41312972-41313034)
[»] chr2 (1 HSPs)
chr2 (489-523)||(13557696-13557730)
[»] chr6 (1 HSPs)
chr6 (489-541)||(12868900-12868952)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 34141263 - 34140950
Alignment:
Q  18 catgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141263 catgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctcca 34141164  T
Q  118 atattccacaatgaagttccaaatccatctgctattgaaagcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  34141163 atattccacaatgaagttccaaatccatctgctattgaaagcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaacc 34141064  T
Q  218 atggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141063 atggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagat 34140964  T
Q  318 cattccaactggtt 331  Q
    ||||||||||||||    
T  34140963 cattccaactggtt 34140950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 34137600 - 34137287
Alignment:
Q  18 catgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctcca 117  Q
    ||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||  |||| ||||||||||| ||||| | |||||| |||||||||    
T  34137600 catgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctcca 34137501  T
Q  118 atattccacaatgaagttccaaatccatctgctattgaaagcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaacc 217  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||| |||||  |||| |||||||    
T  34137500 atattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaacc 34137401  T
Q  218 atggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagat 317  Q
    |||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  34137400 atggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgctcagagtttggaggagaagaggaaggttgctagagatgaaat 34137301  T
Q  318 cattccaactggtt 331  Q
    || |||||||||||    
T  34137300 caatccaactggtt 34137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 34133689 - 34133376
Alignment:
Q  18 catgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctcca 117  Q
    ||||||||| || |||||  |||| |||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||    
T  34133689 catgggagaagtggaccctgcttttgttcaagagcaagaacacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctcca 34133590  T
Q  118 atattccacaatgaagttccaaatccatctgctattgaaagcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaacc 217  Q
    ||  | ||| ||| ||||||||||||||||| |||||||| ||| || |||||||||||||||||| |||| |||||||| |||||| |||| |||||||    
T  34133589 attcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaacc 34133490  T
Q  218 atggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagat 317  Q
    ||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34133489 atggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggt 34133390  T
Q  318 cattccaactggtt 331  Q
    || ||| |||||||    
T  34133389 caatcctactggtt 34133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 43 - 319
Target Start/End: Complemental strand, 34127391 - 34127115
Alignment:
Q  43 gttcaagagctagaacacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatc 142  Q
    |||||||||| |||||||||||||||||| ||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | |||    
T  34127391 gttcaagagcaagaacacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatc 34127292  T
Q  143 catctgctattgaaagcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggca 242  Q
     |||||||||||| ||||| || ||| ||||||||||||||||||| || ||||| |||||| |||||||||||||||  |||||||||||| | |||||    
T  34127291 aatctgctattgatagcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggca 34127192  T
Q  243 gaggcttgatgaagctgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatca 319  Q
     || |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||    
T  34127191 aagacttgatgaagctgctagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatca 34127115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 653
Target Start/End: Original strand, 40333163 - 40333306
Alignment:
Q  510 atagtatatattaaaaaacaatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaata 609  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  40333163 atagtatatattaaaaaacaatgctaccaaaggaatggtgggtataacatgtacagaagttgatttggaccttgaatgaagtgttttctcataagaaata 40333262  T
Q  610 taccgtgtaggcaaaatttgtcatttgtatcaaatcaaaattag 653  Q
    ||| | | |||||||||||||||||||| |||||||||||||||    
T  40333263 tacagaggaggcaaaatttgtcatttgtgtcaaatcaaaattag 40333306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
Q  331 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140418 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 34140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
Q  413 ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 467  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40333025 ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg 40333079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 40333076 - 40333114
Alignment:
Q  503 tttgtttatagtatatattaaaaaacaatgctaccaaag 541  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40333076 tttgtttatagtatatattaaaaaacaatgttatcaaag 40333114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 532
Target Start/End: Original strand, 6020123 - 6020164
Alignment:
Q  492 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 532  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  6020123 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 6020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 532
Target Start/End: Complemental strand, 48583895 - 48583854
Alignment:
Q  492 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 532  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  48583895 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 48583854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 48583989 - 48583945
Alignment:
Q  409 agcgctgctatacagcaagacaaagtcagcacacgagagccacac 453  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacac 48583945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 510 - 653
Target Start/End: Complemental strand, 13066704 - 13066561
Alignment:
Q  510 atagtatatattaaaaaacaatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaata 609  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  13066704 atagtatatattaaaaaacaatgctaccaaagaaatggtgggtatgacacgtacagaagttgatttggaccttgaatgaagtgttttctcataagaaata 13066605  T
Q  610 taccgtgtaggcaaaatttgtcatttgtatcaaatcaaaattag 653  Q
    ||| ||| ||| |||||||||||||||| |||||||||||||||    
T  13066604 tacagtggaggaaaaatttgtcatttgtgtcaaatcaaaattag 13066561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 407 - 541
Target Start/End: Complemental strand, 13066886 - 13066753
Alignment:
Q  407 agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttgctgtattattagttttctttcagtttattgatgcttttg 506  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgttgtattattag-tttctttcagtttattgatgcttttg 13066788  T
Q  507 tttatagtatatattaaaaaacaatgctaccaaag 541  Q
    |||||||||||||||||||||||||| || |||||    
T  13066787 tttatagtatatattaaaaaacaatgttatcaaag 13066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 518 - 653
Target Start/End: Complemental strand, 17074569 - 17074435
Alignment:
Q  518 tattaaaaaacaatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgt 617  Q
    |||| |||||||| |||||||||| ||| ||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||     
T  17074569 tatttaaaaacaaggctaccaaagcaatggtgggtatgac-cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtgg 17074471  T
Q  618 aggcaaaatttgtcatttgtatcaaatcaaaattag 653  Q
    ||||| |||||||||||||| |||||||||||||||    
T  17074470 aggcataatttgtcatttgtgtcaaatcaaaattag 17074435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 518 - 653
Target Start/End: Original strand, 17573701 - 17573835
Alignment:
Q  518 tattaaaaaacaatgctaccaaaggaattgtgggtatgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgt 617  Q
    |||| |||||||| |||||||||| ||| ||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||     
T  17573701 tatttaaaaacaaggctaccaaagcaatggtgggtatgac-cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtgg 17573799  T
Q  618 aggcaaaatttgtcatttgtatcaaatcaaaattag 653  Q
    ||||| |||||||||||||| |||||||||||||||    
T  17573800 aggcataatttgtcatttgtgtcaaatcaaaattag 17573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 41312972 - 41313034
Alignment:
Q  471 tattattagttttctttcagtttattgatgcttttgtttatagta-tatattaaaaaacaatg 532  Q
    ||||| ||| |||||||  | |||||||||||||||| ||||||| |||||||||||||||||    
T  41312972 tattaatagatttctttatggttattgatgcttttgtatatagtagtatattaaaaaacaatg 41313034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 523
Target Start/End: Complemental strand, 13557730 - 13557696
Alignment:
Q  489 agtttattgatgcttttgtttatagtatatattaa 523  Q
    ||||||||||||||||||| |||||||||||||||    
T  13557730 agtttattgatgcttttgtatatagtatatattaa 13557696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 541
Target Start/End: Complemental strand, 12868952 - 12868900
Alignment:
Q  489 agtttattgatgcttttgtttatagtatatattaaaaaacaatgctaccaaag 541  Q
    ||||||| ||||||||||| || | ||||||||||||||| ||| ||||||||    
T  12868952 agtttatcgatgcttttgtataaaatatatattaaaaaaccatgttaccaaag 12868900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University