View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_92 (Length: 271)

Name: NF11538_high_92
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_92
NF11538_high_92
[»] chr3 (14 HSPs)
chr3 (121-229)||(54734146-54734254)
chr3 (58-108)||(54528983-54529033)
chr3 (44-108)||(33148826-33148890)
chr3 (44-108)||(33450047-33450111)
chr3 (51-108)||(7546078-7546135)
chr3 (63-108)||(21566981-21567026)
chr3 (63-108)||(50663876-50663921)
chr3 (44-103)||(52311860-52311919)
chr3 (52-106)||(3540254-3540308)
chr3 (58-108)||(42947376-42947426)
chr3 (58-108)||(47064865-47064915)
chr3 (51-108)||(42951008-42951065)
chr3 (64-108)||(13843626-13843670)
chr3 (64-108)||(44430419-44430463)
[»] chr7 (14 HSPs)
chr7 (62-108)||(28138760-28138806)
chr7 (62-108)||(26009370-26009416)
chr7 (51-108)||(23345066-23345123)
chr7 (51-108)||(36325620-36325677)
chr7 (54-105)||(23344444-23344495)
chr7 (62-108)||(26011984-26012030)
chr7 (44-108)||(10526997-10527061)
chr7 (62-108)||(19931489-19931535)
chr7 (62-108)||(33839473-33839519)
chr7 (62-108)||(41957597-41957643)
chr7 (58-108)||(42548162-42548212)
chr7 (44-108)||(25428732-25428796)
chr7 (44-108)||(28139448-28139512)
chr7 (44-108)||(31852636-31852700)
[»] scaffold0163 (1 HSPs)
scaffold0163 (58-108)||(35777-35827)
[»] chr6 (7 HSPs)
chr6 (62-108)||(14153355-14153401)
chr6 (60-108)||(806546-806594)
chr6 (52-108)||(2559640-2559696)
chr6 (62-108)||(1826590-1826636)
chr6 (44-84)||(1826136-1826176)
chr6 (58-108)||(35060922-35060972)
chr6 (51-108)||(6819611-6819668)
[»] chr2 (9 HSPs)
chr2 (44-106)||(17797025-17797087)
chr2 (46-106)||(9539093-9539153)
chr2 (62-108)||(25389881-25389927)
chr2 (70-108)||(28360221-28360259)
chr2 (60-108)||(31133180-31133228)
chr2 (44-103)||(38147085-38147144)
chr2 (62-108)||(12965050-12965096)
chr2 (62-108)||(22788016-22788062)
chr2 (64-108)||(20685007-20685051)
[»] chr4 (7 HSPs)
chr4 (58-108)||(33164532-33164582)
chr4 (63-108)||(38677694-38677739)
chr4 (58-108)||(28796621-28796671)
chr4 (58-108)||(36217871-36217921)
chr4 (54-108)||(37576544-37576598)
chr4 (62-108)||(54208181-54208227)
chr4 (64-97)||(37030921-37030954)
[»] chr1 (10 HSPs)
chr1 (58-108)||(3792297-3792347)
chr1 (62-108)||(5602945-5602991)
chr1 (60-106)||(9862921-9862967)
chr1 (58-108)||(37260940-37260990)
chr1 (61-105)||(35392134-35392178)
chr1 (58-108)||(20447024-20447074)
chr1 (58-108)||(20532787-20532837)
chr1 (62-108)||(28476013-28476059)
chr1 (60-108)||(5119060-5119108)
chr1 (44-108)||(42883109-42883173)
[»] chr8 (2 HSPs)
chr8 (44-108)||(3588558-3588622)
chr8 (64-108)||(9418588-9418632)
[»] chr5 (2 HSPs)
chr5 (54-108)||(3758923-3758977)
chr5 (60-108)||(38739388-38739436)
[»] scaffold1763 (1 HSPs)
scaffold1763 (64-108)||(397-441)
[»] scaffold0246 (1 HSPs)
scaffold0246 (64-108)||(2886-2930)
[»] scaffold0041 (1 HSPs)
scaffold0041 (64-108)||(23488-23532)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 54734254 - 54734146
Alignment:
Q  121 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734254 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 54734155  T
Q  221 caactcaca 229  Q
    |||||||||    
T  54734154 caactcaca 54734146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 54528983 - 54529033
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  54528983 tggacatttacattgagaatgagcaaaatcattttggtaaagagcagaatt 54529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 33148890 - 33148826
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| |||||||||| |||||||||||| ||| |||||||| | ||||||||| ||||||||||    
T  33148890 acgcaaaggcaatatgtacatttactttgggaacgagcaaaaacgtttgggtaatgagcagaatt 33148826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 33450047 - 33450111
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| | ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||    
T  33450047 acgcagggacaatatggacatttattttgagaatgagcaaaacagtttgggtaatgagcagaatt 33450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 7546135 - 7546078
Alignment:
Q  51 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||| ||| |||| |||   ||||||||||||||||||||    
T  7546135 ggcaatatggacatttactttgggaacgagcgaaacagtttgggtaaagagcagaatt 7546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 21566981 - 21567026
Alignment:
Q  63 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  21566981 atttacattgggaatgagaaaaatcatttgggtaaagagcagaatt 21567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 50663921 - 50663876
Alignment:
Q  63 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||    
T  50663921 atttactttgggaatgagcgaaatcatttgggtgaagagcagaatt 50663876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 52311860 - 52311919
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 103  Q
    |||||| |||||||| ||||||||||||| ||| ||||||||  |||| |||||||||||    
T  52311860 acgcaggggcaatatagacatttactttgggaacgagcaaaacaattttggtaaagagca 52311919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 3540254 - 3540308
Alignment:
Q  52 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 106  Q
    ||||||||||||||||||||| ||| ||||||||   ||| ||||||||||||||    
T  3540254 gcaatatggacatttactttgggaacgagcaaaacagttttggtaaagagcagaa 3540308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 42947426 - 42947376
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||    
T  42947426 tggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 47064915 - 47064865
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  47064915 tggacttttactttgggaatgagcagaatcatttgggtaatgagcataatt 47064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 42951008 - 42951065
Alignment:
Q  51 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||| ||||||||  ||  ||||| |||| ||||||||||    
T  42951008 ggcaatatggacatttactttgggaatgagcggaagtatttgagtaatgagcagaatt 42951065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 44430463 - 44430419
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaatt 44430419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 28138806 - 28138760
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28138806 catttactttgggaatgagcaaaatcatttgggtaaagagcagaatt 28138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 26009416 - 26009370
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  26009416 catttactttgggaatgagcaaaatcgtttgggtaaagagcagaatt 26009370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 23345066 - 23345123
Alignment:
Q  51 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| ||||    
T  23345066 ggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagcataatt 23345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 36325677 - 36325620
Alignment:
Q  51 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||||||| ||||||||   |||| |||||||||||||||    
T  36325677 ggcaatatggacatttactttgagaacgagcaaaactgtttgagtaaagagcagaatt 36325620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 23344495 - 23344444
Alignment:
Q  54 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcaga 105  Q
    |||||||||||||||||| | ||||||||||| | |||||||||||||||||    
T  23344495 aatatggacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 26011984 - 26012030
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26011984 catttactttgagaatgattaaaatcgtttgggtaaagagcagaatt 26012030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 10526997 - 10527061
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| ||||||| ||||||||||||||| ||||||   ||  ||||||||||||||||||||||    
T  10526997 acgcaaaggcaatttggacatttactttgggaatgattgaatccatttgggtaaagagcagaatt 10527061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 19931535 - 19931489
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  19931535 catttactttgagaacgagcaaaaccatttagataaagagcagaatt 19931489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 33839473 - 33839519
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  33839473 catttactttgagaatgagcgaatccatttggataaagagcagaatt 33839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 41957597 - 41957643
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  41957597 catttactttgggaatgatcaaaatcgtttgggtaaagagcaaaatt 41957643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 42548212 - 42548162
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||    
T  42548212 tggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 25428796 - 25428732
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| |||| | |||| |||||||||| ||||||||| || | ||||||||||||||| ||||    
T  25428796 acgcaggggcattttggatatttactttgggaatgagcagaaccgtttgggtaaagagcaaaatt 25428732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 28139448 - 28139512
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| |||| | ||| ||||||||||| ||||| |||||  |||||||||||| |||||||||    
T  28139448 acgcaggggcattttggtcatttactttgggaatgggcaaatccatttgggtaaaaagcagaatt 28139512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 31852700 - 31852636
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| || |||||| ||||||||||||| || |||||||| | ||||| ||| ||||||||||    
T  31852700 acgcaggggtaatatgaacatttactttgaaaacgagcaaaaccgtttggataatgagcagaatt 31852636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 35827 - 35777
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  35827 tggacatttactttgagaatgagcaaaattgtttggttaaagagcagaatt 35777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 14153401 - 14153355
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14153401 catttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 806594 - 806546
Alignment:
Q  60 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  806594 gacatttactttgagaatgagcaaaactgtttgggtaaagagcagaatt 806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 2559640 - 2559696
Alignment:
Q  52 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  2559640 gcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaatt 2559696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 1826590 - 1826636
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||    
T  1826590 catttactttaaaaatgagcaaaatcatttggataaagagcagaatt 1826636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 1826176 - 1826136
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaa 84  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  1826176 acgcaaaggtaatatggacatttactttgagaatgagcaaa 1826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 35060922 - 35060972
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||  |||||||  |||||||||||||| ||||||||||    
T  35060922 tggacatttactttggaaatgagcggaatcatttgggtaatgagcagaatt 35060972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 6819611 - 6819668
Alignment:
Q  51 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||| |||| ||| ||||||||   ||| ||||||||||||||||    
T  6819611 ggcaatatggacatttattttgggaacgagcaaaactgttttggtaaagagcagaatt 6819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 17797025 - 17797087
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 106  Q
    |||||| |||||||||||||||||||||| |||  ||||||||  ||||||||||||||||||    
T  17797025 acgcaggggcaatatggacatttactttgggaacaagcaaaattgtttgggtaaagagcagaa 17797087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 9539093 - 9539153
Alignment:
Q  46 gcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 106  Q
    |||| ||||||||| |||||||||||| |||||||||||||  ||| ||||||||||||||    
T  9539093 gcaggggcaatatgaacatttactttgggaatgagcaaaatagttttggtaaagagcagaa 9539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 25389881 - 25389927
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||    
T  25389881 catttactttgagaatgagcaaatccatttgagtaaagagcagaatt 25389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 28360221 - 28360259
Alignment:
Q  70 ttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28360221 ttgagaatgagcaaaaacatttgggtaaagagcagaatt 28360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 31133228 - 31133180
Alignment:
Q  60 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  31133228 gacatttactttaaaaatgagcgaaatgatttgggtaaagagcagaatt 31133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 38147085 - 38147144
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 103  Q
    ||||||||| |||||| |||||||||||  |||||||| ||  |||||||||||||||||    
T  38147085 acgcagaggtaatatgaacatttactttaggaatgagcgaatccatttgggtaaagagca 38147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 12965096 - 12965050
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||| |||||||| || | ||||||||||||||||||||    
T  12965096 catttactttgaaaatgagcagaaacgtttgggtaaagagcagaatt 12965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 22788016 - 22788062
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  22788016 catttactttgggaatgaacaaatccatttgggtaaagagcagaatt 22788062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 20685051 - 20685007
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||  || ||||||||||| ||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaatt 20685007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 33164532 - 33164582
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||    
T  33164532 tggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 38677694 - 38677739
Alignment:
Q  63 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  38677694 atttactttgggaatgaacaaaatcgtttgggtaaagagcagaatt 38677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28796671 - 28796621
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||||| | ||  ||||||||| ||||||||||    
T  28796671 tggacatttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 36217921 - 36217871
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||| ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  36217921 tggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaatt 36217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 37576598 - 37576544
Alignment:
Q  54 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||  || |||||||| | ||||||||| ||||||||||    
T  37576598 aatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaatt 37576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 54208227 - 54208181
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  54208227 catttactttgggaatgagcaaaaccatttggataaagagcataatt 54208181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 37030954 - 37030921
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaa 97  Q
    ||||||||| ||||||||||||||||||||||||    
T  37030954 tttactttgggaatgagcaaaatcatttgggtaa 37030921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 3792347 - 3792297
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||| |||||||||||| | |||||||||||||| ||||||||||    
T  3792347 tggacatttattttgagaatgagtagaatcatttgggtaatgagcagaatt 3792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 5602991 - 5602945
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  5602991 catttactttgggaatgagcaaatccatttgggtaaagagcagaatt 5602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 9862921 - 9862967
Alignment:
Q  60 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 106  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  9862921 gacatttattttgggaatgagcgaaatcatttgggtaaagagcagaa 9862967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 37260940 - 37260990
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||| ||||    
T  37260940 tggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataatt 37260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 35392134 - 35392178
Alignment:
Q  61 acatttactttgagaatgagcaaaatcatttgggtaaagagcaga 105  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||    
T  35392134 acatttactttgggaatgagcaaaacaatttgggtaaagagcaga 35392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 20447074 - 20447024
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20447074 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20447024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 20532837 - 20532787
Alignment:
Q  58 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20532837 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 28476013 - 28476059
Alignment:
Q  62 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||    
T  28476013 catttactttgagaatgagcggaaccatttgggtaatgagcagaatt 28476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 5119060 - 5119108
Alignment:
Q  60 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||||||  |||||||||||| | ||||| ||||||||||||||    
T  5119060 gacatttactttaggaatgagcaaaaccgtttggataaagagcagaatt 5119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 42883173 - 42883109
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| | ||||||| |||||||||||  | ||||||||||   ||||||||||||||||||||    
T  42883173 acgcagggacaatatgaacatttactttaggtatgagcaaaactgtttgggtaaagagcagaatt 42883109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 3588558 - 3588622
Alignment:
Q  44 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| |||| | ||| |||||| |||| ||||||||||| |||||||||||||||| ||||||    
T  3588558 acgcaggggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaatt 3588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 9418632 - 9418588
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 9418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 3758977 - 3758923
Alignment:
Q  54 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||| |||||||||||| ||||||| |||| | ||| ||||||||||||||||    
T  3758977 aatatgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaatt 3758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 38739436 - 38739388
Alignment:
Q  60 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||| ||||||| |||  |||||||||||||||| ||||    
T  38739436 gacatttactttgacaatgagcgaaacgatttgggtaaagagcataatt 38739388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 397 - 441
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    ||||||||| |||||||| ||| ||||||||||||||||| ||||    
T  397 tttactttgggaatgagcgaaaccatttgggtaaagagcataatt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 2886 - 2930
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  2886 tttattttgagaatgagcgaaaccatttgggtaatgagcagaatt 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 23532 - 23488
Alignment:
Q  64 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 108  Q
    |||||||||||||||||||||| ||||||  ||| ||||||||||    
T  23532 tttactttgagaatgagcaaaaccatttgaataatgagcagaatt 23488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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