View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_104 (Length: 241)
Name: NF11538_low_104
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_104 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 36715655 - 36715880
Alignment:
| Q |
16 |
cacatacaagttactttcttctgtttgttcacaaatcaaatctagccaaaagtttcaaaatgcacaaaaatggttatgtatagggaatcttcgagggact |
115 |
Q |
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| T |
36715655 |
cacacacaagttactttcttctgtttgttcacaaatcaaatctagccaaaagtttcaaaatgcacaaaaatggttatgtatagggaatcttcgagggact |
36715754 |
T |
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| Q |
116 |
aaaagcatatagaacagaagatgggcgaatccttcttttccgaccggaggagaatgctctacgcatgaagatgggggctgataggttgtgtatgccgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36715755 |
aaaagcatatagaacagaagatgggcgaatccttcttttccgaccggaggagaatgctctacgcatgaagatgggggctgataggttgtgtatgccgtca |
36715854 |
T |
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| Q |
216 |
ccatcggttgagcagtttgttgatgc |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36715855 |
ccatcggttgagcagtttgttgatgc |
36715880 |
T |
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