View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_105 (Length: 240)
Name: NF11538_low_105
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_105 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47253789 - 47254010
Alignment:
| Q |
18 |
ctaagtaagtattatagttagttagttaatattaatttatagttattgtaaaatgaatctttcatgaagcctaat--gtttatgtggtgagagttccctc |
115 |
Q |
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| T |
47253789 |
ctaagtaagtactatagttagttagttaatactaatttatagttattgtaaaaggaatctttcatgaagcctaatatgtttatgtggtgagagttccctt |
47253888 |
T |
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| Q |
116 |
gattaatcttacactccaaaatttgtatattgagtatggtgttttgacaatgagtgactgatcaccatgagagacttggtgaccaagcagttttcatctt |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
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| T |
47253889 |
gattaatcttacactccaaaatttgtatatcgagtatggtgttttgacaatgagtgac---tcaccatgagagacttggcgaccaaacagttttcatctt |
47253985 |
T |
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| Q |
216 |
cactttacaaagcagttccctcgat |
240 |
Q |
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| T |
47253986 |
tactttacaaagcagttccctcgat |
47254010 |
T |
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