View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_107 (Length: 239)
Name: NF11538_low_107
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_107 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41244882 - 41244660
Alignment:
| Q |
1 |
ttcttggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244882 |
ttctcggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggt |
41244783 |
T |
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| Q |
101 |
gacattggaaattccttatagtgagtgtgtcaatgttgccaaaatatacaagaaagtttcttctggtataagacctgctgcaatgaacaaggtcaaagat |
200 |
Q |
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| T |
41244782 |
gacattggaaattccttatagtgagtgtgacaatgttgccaaaatatacaagaaagtttcttctggtataagacctgctgcaatgaacaaggtcaaagat |
41244683 |
T |
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| Q |
201 |
tcagaggtaaaggaattcattga |
223 |
Q |
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| T |
41244682 |
tcagaggtaaaggaattcattga |
41244660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 42726772 - 42726881
Alignment:
| Q |
42 |
gaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgtcaatgttgcca |
141 |
Q |
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| T |
42726772 |
gaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagcca |
42726871 |
T |
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| Q |
142 |
aaatatacaa |
151 |
Q |
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| T |
42726872 |
agatatacaa |
42726881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 45873899 - 45873746
Alignment:
| Q |
1 |
ttcttggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggt |
100 |
Q |
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| T |
45873899 |
ttcttgggacaccagagtttatggcacctgaattatatgaagagaattacactgaattggtggacatatactcatttggaatgttagtactggagatggt |
45873800 |
T |
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| Q |
101 |
gacattggaaattccttatagtgagtgtgtcaatgttgccaaaatatacaagaa |
154 |
Q |
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| T |
45873799 |
gacacgagagattccttatagtgaatgtgacaatgttgcaaagatatacaagaa |
45873746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 22263470 - 22263317
Alignment:
| Q |
1 |
ttcttggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggt |
100 |
Q |
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|||| |||||||| || |||||||| ||||| |||| || || | ||||||||| |||| ||||||||||||||||| |||| |||||||| ||||| |
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| T |
22263470 |
ttctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatgttagtattagagatggt |
22263371 |
T |
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| Q |
101 |
gacattggaaattccttatagtgagtgtgtcaatgttgccaaaatatacaagaa |
154 |
Q |
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| T |
22263370 |
gacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaa |
22263317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 22270370 - 22270523
Alignment:
| Q |
1 |
ttcttggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggt |
100 |
Q |
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|||| |||||||| || |||||||| ||||| |||| || || | ||||||||| |||| ||||||||||||||||| |||| |||||||| ||||| |
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| T |
22270370 |
ttctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatgttagtattagagatggt |
22270469 |
T |
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| Q |
101 |
gacattggaaattccttatagtgagtgtgtcaatgttgccaaaatatacaagaa |
154 |
Q |
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| T |
22270470 |
gacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaa |
22270523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 20746 - 20855
Alignment:
| Q |
42 |
gaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgtcaatgttgcca |
141 |
Q |
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| T |
20746 |
gaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagcca |
20845 |
T |
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| Q |
142 |
aaatatacaa |
151 |
Q |
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| T |
20846 |
agatatacaa |
20855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 47353781 - 47353711
Alignment:
| Q |
54 |
gaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtga |
124 |
Q |
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| T |
47353781 |
gaattagttgacatatattcctttggtatgtgcgtattagaaatggtcacatttgagtatccttatagtga |
47353711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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