View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_109 (Length: 239)

Name: NF11538_low_109
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_109
NF11538_low_109
[»] chr1 (3 HSPs)
chr1 (11-223)||(15237124-15237336)
chr1 (46-223)||(34051953-34052130)
chr1 (65-117)||(31197688-31197740)
[»] chr3 (1 HSPs)
chr3 (86-183)||(48670642-48670739)
[»] chr7 (1 HSPs)
chr7 (65-204)||(49041796-49041935)
[»] chr6 (2 HSPs)
chr6 (80-219)||(10277332-10277471)
chr6 (65-204)||(26463858-26463997)
[»] chr4 (1 HSPs)
chr4 (65-204)||(26452754-26452893)
[»] chr2 (1 HSPs)
chr2 (47-216)||(23499753-23499922)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 15237336 - 15237124
Alignment:
Q  11 ttttggataatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15237336 ttttggattatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa 15237237  T
Q  111 gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15237236 gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat 15237137  T
Q  211 cccaatatcctta 223  Q
    |||||||||||||    
T  15237136 cccaatatcctta 15237124  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 34052130 - 34051953
Alignment:
Q  46 tacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataa 145  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    | ||| ||||| |||||||||    
T  34052130 tacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataa 34052031  T
Q  146 tgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaatatcctta 223  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34052030 tgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaatcccaatatcctta 34051953  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 31197740 - 31197688
Alignment:
Q  65 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattata 117  Q
    ||||| ||||| || |||||||||||||||||||||||||| |||||||||||    
T  31197740 gcaagatcaattgaaataagaccagcactacaacccatacctccaagattata 31197688  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 48670739 - 48670642
Alignment:
Q  86 ccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggatt 183  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| | ||||||||| || |  ||||||||||||||    
T  48670739 ccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgacaatgatggtgttggatt 48670642  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 49041796 - 49041935
Alignment:
Q  65 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 164  Q
    ||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||    || |||  ||| | ||| ||||| ||||||||||| ||||    
T  49041796 gcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcag 49041895  T
Q  165 aaagagatggtgttggattaaacaaactacaattcacaac 204  Q
    |||| || || ||||| ||||||||||||||||| |||||    
T  49041896 aaagtgaaggagttgggttaaacaaactacaatttacaac 49041935  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 10277471 - 10277332
Alignment:
Q  80 ataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttg 179  Q
    |||| ||||||||| || |||||||||| |||||||||  |||| ||||||||||| |  ||||||||||| |||||  |  | ||||| |||||||| |    
T  10277471 ataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtag 10277372  T
Q  180 gattaaacaaactacaattcacaaccaaaatcccaatatc 219  Q
    ||||||| |||| ||||||||| || | ||| ||||||||    
T  10277371 gattaaataaacaacaattcaccacaagaattccaatatc 10277332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 26463997 - 26463858
Alignment:
Q  65 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 164  Q
    ||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||    || |||  ||| | ||| | ||| ||||||||||| ||||    
T  26463997 gcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcag 26463898  T
Q  165 aaagagatggtgttggattaaacaaactacaattcacaac 204  Q
    |||| || || ||||| ||| ||||||||||||| |||||    
T  26463897 aaagggaaggagttgggttatacaaactacaatttacaac 26463858  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 26452893 - 26452754
Alignment:
Q  65 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 164  Q
    ||||| |||||||  |||| |||||||||||||||||||||||| | |||| ||||    ||||| || || || ||||| |  || |||||||| || |    
T  26452893 gcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatcatagctg 26452794  T
Q  165 aaagagatggtgttggattaaacaaactacaattcacaac 204  Q
    |||| ||||| ||||||||||||||||||||||| |||||    
T  26452793 aaagtgatggcgttggattaaacaaactacaattaacaac 26452754  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 23499753 - 23499922
Alignment:
Q  47 acctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataat 146  Q
    ||||| || |||| ||| ||||| ||||| || ||||  |||||||| || ||||| ||||||||||| |||||||  || || ||||||| |||||| |    
T  23499753 acctggagaagctctttagcaagatcaattgaaataatcccagcactgcatcccatcccaccaagattgtaactcattatgttacctctcagcttatagt 23499852  T
Q  147 gattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaat 216  Q
    |||| |  ||||| ||||| || || || ||||||  ||| | |||||||||||||| || ||| |||||    
T  23499853 gattgatgatcattgcagagagtgacggagttggacaaaaaagactacaattcacaatcagaattccaat 23499922  T

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