View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_11 (Length: 669)
Name: NF11538_low_11
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_11 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 3 - 653
Target Start/End: Complemental strand, 15773325 - 15772675
Alignment:
| Q |
3 |
ataggccttaattcttgcctatattgaacacacaataaagctaccttaaccattctctcagcaatttctctatttttctcctctattccacaaactatca |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
15773325 |
ataggccttaattctggcctatattgaacacaccataaagctaccttaatcattctctcagcaatctctttatttttctcttctattccacaaactatca |
15773226 |
T |
|
| Q |
103 |
ttgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggctttcagtgtttttaatgtcaaggtttcttctcctacc |
202 |
Q |
| |
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|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15773225 |
ttgcctcccccaaaagtccagcatctttttttttccaaacccaaattggaaaccactcttggctttcagtgtttttaatggcaaggtttcttctcctacc |
15773126 |
T |
|
| Q |
203 |
taaaatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagttcaggtgcggcgtagccaggcgtcccc |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15773125 |
tataatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagttcaggtgcggcgtaaccaggcgtcccc |
15773026 |
T |
|
| Q |
303 |
cttcctccggtcattgttatgggagtattttccctgttgcaatttttggccaaaccaaaatcagcgactttaggatagaagttcttatccaagagaatat |
402 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15773025 |
cttcccccggtcattgttatgtgagtattttccctgttgcaatttttggccaaaccaaaatcagcgactttaggatagaagttcttatccaagagaatat |
15772926 |
T |
|
| Q |
403 |
ttcccggttttatatcgtagtggattattctatgttgacactcttcgtgcaagtaagcaatgcctcttgccgtaccaatggcaatctcatgaagcttttc |
502 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15772925 |
ttcccggttttatatcatagtggattattctatgttgacactcttcgtgcaagtaagcaatgcctcttgccgtaccaattgcaatctcatgaagcttttc |
15772826 |
T |
|
| Q |
503 |
atatcctaacacttttgtttcatgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaat |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15772825 |
atatcctaacacttttgtttcatgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaat |
15772726 |
T |
|
| Q |
603 |
ccatataacctaacgagattaaagtgatgaattctaccgattgttccaact |
653 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15772725 |
ccatataacctaacaagattaaagtgatgaattctaccgattgttccaact |
15772675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 653
Target Start/End: Original strand, 15794641 - 15795293
Alignment:
| Q |
1 |
tcataggccttaattcttgcctatattgaacacacaataaagctaccttaaccattctctcagcaatttctctatttttctcctctattccacaaactat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
15794641 |
tcataggccttaattgttgcctatattgaacacaccataaagctaccttaaccattctctcagcaatctctctatttttctcttctattccacaaactat |
15794740 |
T |
|
| Q |
101 |
cattgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggctttcagtgtttttaatgtcaaggtttcttctccta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
15794741 |
cattgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctccta |
15794840 |
T |
|
| Q |
201 |
cctaaaatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagttcaggtgcggcgtagccaggcgtcc |
300 |
Q |
| |
|
|| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || ||||||| |
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|
| T |
15794841 |
ccaacaatttcaaataacagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagctcaggtgcagcataaccgggcgtcc |
15794940 |
T |
|
| Q |
301 |
cccttcctccggtcattgttatgggagtattttccctgttgcaatttttggccaaaccaaaatcagcgactttaggatagaagttcttatccaagagaat |
400 |
Q |
| |
|
||||||| || ||||| ||||| |||||||||||| ||| ||| ||| ||||||||||||||||| |||||||||| ||| ||| |||||||||||| |
|
|
| T |
15794941 |
cccttcccccagtcatcgttatatgagtattttcccggttacaaagttttgccaaaccaaaatcagcaactttaggattgaaattcccatccaagagaat |
15795040 |
T |
|
| Q |
401 |
atttcccggttttatatcgtagtggattattctatgttgacactcttcgtgcaagtaagcaatgcctcttgccgtaccaatggcaatctcatgaagcttt |
500 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15795041 |
atttcctggttttatatcgtagtggactattctatgttcacacaattcatgcaagtaagcaatgcctcttgccgtaccaattgcaatctcatgaagcttt |
15795140 |
T |
|
| Q |
501 |
tcatatcctaacacttttgtttcatgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaa |
600 |
Q |
| |
|
||||| ||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
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|
| T |
15795141 |
tcataacctaaggcatttttttcatgcaacaaatacctatcaagtgatccatttcccatgtattcataaacaagtgctatcaagtttttctcaaagcaaa |
15795240 |
T |
|
| Q |
601 |
atccatataacctaacgagattaaagtgatgaattctaccgattgttccaact |
653 |
Q |
| |
|
||||| ||| | |||| ||||| |||||||||||||| || |||||||||||| |
|
|
| T |
15795241 |
atccaaatagcttaacaagattgaagtgatgaattctgccaattgttccaact |
15795293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 653
Target Start/End: Complemental strand, 15768693 - 15768044
Alignment:
| Q |
4 |
taggccttaattcttgcctatattgaacacacaataaagctaccttaaccattctctcagcaatttctctatttttctcctctattccacaaactatcat |
103 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||| |||||| || | |
|
|
| T |
15768693 |
taggtcttgattctggcctatattgaacacatgccaaagctaccttaaccattctctctacaatctccatatttttctcctctatcccacaagctgctac |
15768594 |
T |
|
| Q |
104 |
tgcctcctccaatagtccagcatcaaattttttccaaacccaaattggaaaccactcttggctttcagtgtttttaatgtcaaggtttcttctcctacct |
203 |
Q |
| |
|
|| | || | || ||||||| ||||||||||||||||| || |||||||| ||||||||||| | | || | ||| ||||||||||||||||| |
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|
| T |
15768593 |
caattcattcacttgttcagcatcgaattttttccaaacccatatcggaaaccattcttggctttctgcgaggtttacatcatggtttcttctcctacct |
15768494 |
T |
|
| Q |
204 |
aaaatttcaaataatagcataccaaaactataaacatcacatttatgagttataggaaatggcatccaaagttcaggtgcggcgtagccaggcgtccccc |
303 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| ||||| || ||||||| |||||||||||||||||| |||||||| || || || |||||||||| |
|
|
| T |
15768493 |
ataatttcaaatagtagtataccaaaactataaacgtcacacttgtgagttacaggaaatggcatccaaagctcaggtgctgcataaccgggcgtccccc |
15768394 |
T |
|
| Q |
304 |
ttcctccggtcattgttatgggagtattttccctgttgcaatttttggccaaaccaaaatcagcgactttaggatagaagttcttatccaagagaatatt |
403 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||| | ||| ||| |||||||||||||||| |
|
|
| T |
15768393 |
ttcctccgctcatcgttatgtgagtattttccctgttgcaaagtttggccaagccaaaatcagcaactttagggttgaaattcgtatccaagagaatatt |
15768294 |
T |
|
| Q |
404 |
tcccggttttatatcgtagtggattattctatgttgacactcttcgtgcaagtaagcaatgcctcttgccgtaccaatggcaatctcatgaagcttttca |
503 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
15768293 |
tcctggttttatatcgtagtggattattctttgttggcattcttcatgtaagtaagcaatgcctcttgcggtaccaattgcaatctctcaaagcttttca |
15768194 |
T |
|
| Q |
504 |
tatcctaacacttttgt-ttcatgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaat |
602 |
Q |
| |
|
||||||| | | |||| ||| || |||||||| | |||||| ||||| || | |||||||||||||||||| ||||||||||| ||||||| ||| | |
|
|
| T |
15768193 |
aatcctaaga-tattgtattcttggaacaaatagcgatcaagagatccgttcctcatgtattcataaacaagtgctatcaagttcttttcaaaacaataa |
15768095 |
T |
|
| Q |
603 |
ccatataacctaacgagattaaagtgatgaattctaccgattgttccaact |
653 |
Q |
| |
|
||||||| |||| | ||||| || || |||| | |||| ||||| |||||| |
|
|
| T |
15768094 |
ccatatagcctagcaagattgaaatggtgaactttacctattgtgccaact |
15768044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 602
Target Start/End: Original strand, 39638373 - 39638460
Alignment:
| Q |
515 |
ttttgtttcatgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaat |
602 |
Q |
| |
|
|||| |||||| |||| |||| ||||||| ||||||| || |||||||||||| |||||| | ||| ||| ||||||||||||||||| |
|
|
| T |
39638373 |
ttttttttcattaaacgaatatctatcaaatgatccactttccatgtattcatgaacaagtgttattaagcttctttcaaagcaaaat |
39638460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 15793342 - 15793294
Alignment:
| Q |
201 |
cctaaaatttcaaataatagcataccaaaactataaacatcacatttat |
249 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
15793342 |
cctacaatttcaaataaaagaataccaaaactataaacatcacacttat |
15793294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 15777643 - 15777606
Alignment:
| Q |
348 |
ttggccaaaccaaaatcagcgactttaggatagaagtt |
385 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
15777643 |
ttggccaaaccaaaatcagcaactttaggattgaagtt |
15777606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 15789149 - 15789093
Alignment:
| Q |
193 |
ttctcctacctaaaatttcaaataatagcataccaaaactataaacatcacatttat |
249 |
Q |
| |
|
|||| ||||||| ||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
15789149 |
ttcttctacctacaatttcaaatagaacaataccaaaactataaacatcgcatttat |
15789093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 608
Target Start/End: Complemental strand, 35400523 - 35400472
Alignment:
| Q |
557 |
catgtattcataaacaagcgctatcaagtttctttcaaagcaaaatccatat |
608 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35400523 |
catgtattcataagaaagtgctatcaagtttctttcaacgcaaattccatat |
35400472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 600
Target Start/End: Complemental strand, 35405349 - 35405273
Alignment:
| Q |
524 |
atgaaacaaatacctatcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaa |
600 |
Q |
| |
|
|||||||||||| ||| |||||||| | | ||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
35405349 |
atgaaacaaatatttataaagtgatcaactcatcatgtattcataagaaagtgctatcaagtttcttttaaagcaaa |
35405273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 640
Target Start/End: Original strand, 29384409 - 29384473
Alignment:
| Q |
576 |
gctatcaagtttctttcaaagcaaaatccatataacctaacgagattaaagtgatgaattctacc |
640 |
Q |
| |
|
|||||||| ||||||| |||||||| | ||||||||||| |||||||||| || ||||||||| |
|
|
| T |
29384409 |
gctatcaaatttctttaaaagcaaaggctgtataacctaacaagattaaagtcataaattctacc |
29384473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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