View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_111 (Length: 239)
Name: NF11538_low_111
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_111 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 30947557 - 30947778
Alignment:
| Q |
18 |
tgcacgatgtcactgccgtcgtgagtatcttcttagaatttcgttccaatctgtactgttcttaatattgtatcggaatgaatattaatgagaaagtcaa |
117 |
Q |
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| T |
30947557 |
tgcacgatgtcactgccgtcgtgagtatcttcttagaatttcgttccaatctgtactgttcttaatattgtatcggaatgaatattaatgagaaagtcaa |
30947656 |
T |
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| Q |
118 |
tttagtgtcaacatagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaaccatatctaattgctaattgttataattatggac |
217 |
Q |
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| T |
30947657 |
tttagtgtcaacatagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaagcatatctaattgccaattgttataagtatggac |
30947756 |
T |
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| Q |
218 |
aaagttgtttatcgatatgacc |
239 |
Q |
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| T |
30947757 |
aaagttgtttatcgatatgacc |
30947778 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 6911063 - 6910991
Alignment:
| Q |
129 |
catagtttgcaattgttgcaacaatgttgttcgtcgcttgattttgttagtgaaa-cca-tatctaattgcta |
199 |
Q |
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| T |
6911063 |
catagtttgcaactgttgcaagattgttgtccttcgcttgattttgttagtgaaagccattatctaattgcta |
6910991 |
T |
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