View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_117 (Length: 233)

Name: NF11538_low_117
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_117
NF11538_low_117
[»] chr8 (6 HSPs)
chr8 (1-214)||(1884553-1884766)
chr8 (18-214)||(15217990-15218177)
chr8 (169-214)||(14772906-14772951)
chr8 (168-215)||(10774449-10774496)
chr8 (18-88)||(14773023-14773093)
chr8 (20-90)||(28281194-28281264)
[»] chr6 (4 HSPs)
chr6 (18-214)||(6079776-6079963)
chr6 (18-161)||(20430320-20430463)
chr6 (12-75)||(34728136-34728199)
chr6 (19-88)||(18859074-18859143)
[»] chr2 (5 HSPs)
chr2 (12-214)||(16290938-16291131)
chr2 (4-214)||(8178109-8178307)
chr2 (18-214)||(45329362-45329549)
chr2 (18-128)||(8560856-8560966)
chr2 (19-88)||(27511883-27511952)
[»] chr1 (4 HSPs)
chr1 (24-214)||(49350180-49350361)
chr1 (23-99)||(16538567-16538643)
chr1 (4-88)||(51442329-51442413)
chr1 (168-213)||(27691807-27691852)
[»] chr3 (5 HSPs)
chr3 (23-214)||(52136519-52136704)
chr3 (4-214)||(51450472-51450674)
chr3 (19-214)||(9256461-9256648)
chr3 (169-214)||(15326098-15326143)
chr3 (18-88)||(15325956-15326026)
[»] chr4 (5 HSPs)
chr4 (18-214)||(27452873-27453060)
chr4 (25-215)||(16000430-16000604)
chr4 (19-88)||(14145277-14145346)
chr4 (168-213)||(35672172-35672217)
chr4 (19-75)||(35672301-35672357)
[»] chr5 (2 HSPs)
chr5 (12-168)||(2078280-2078440)
chr5 (4-164)||(25300-25460)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-214)||(440290-440472)
[»] scaffold0279 (1 HSPs)
scaffold0279 (4-214)||(18570-18769)
[»] scaffold0029 (1 HSPs)
scaffold0029 (19-88)||(139876-139945)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-88)||(317342-317411)
[»] chr7 (2 HSPs)
chr7 (19-88)||(22846283-22846352)
chr7 (168-213)||(47438431-47438476)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1884766 - 1884553
Alignment:
Q  1 cgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884766 cgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcg 1884667  T
Q  101 ttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884666 ttttggaacgtagaatatagacactctttcagaaaaatttatggatgtagtagacactatgactaggatgactaggaggaggattaattttatgtgccta 1884567  T
Q  201 caagaaactaagtg 214  Q
    ||||||||||||||    
T  1884566 caagaaactaagtg 1884553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 15218177 - 15217990
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    |||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| | |||||    
T  15218177 gatgtagtgaaaaataagcaagggttcccacatcttcgtgaacaggtgcgggtaaagaagctagttcatgagagtaggattcgttttggaacttggaata 15218078  T
Q  118 tagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||  |||||| |    |||| |||||||||||||||||||         ||||| |||||||||| |||||||||||| |||||||||||||||||    
T  15218077 taggtactcttacgtgtaaatctatggaagtagtagacact---------atgacaaggaggaggactaattttatgtgtctacaagaaactaagtg 15217990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 14772951 - 14772906
Alignment:
Q  169 tgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||    
T  14772951 tgactaagaggaagattaattttatgtgccaacaagaaactaagtg 14772906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 10774496 - 10774449
Alignment:
Q  168 atgactaggaggaggattaattttatgtgcctacaagaaactaagtga 215  Q
    ||||||||||| | |||||||||||| ||||||||||||| |||||||    
T  10774496 atgactaggagtaagattaattttatctgcctacaagaaaataagtga 10774449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 14773093 - 14773023
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    |||||||| |||||||| |||||||  ||| |||||  |||||| ||| ||||||||||| ||||||||||    
T  14773093 gatgcagtaaaaaataagcaagggtctccaaatctttgtgaacgagtgtgggtaaagaagttagttcatga 14773023  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 28281194 - 28281264
Alignment:
Q  20 tgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgata 90  Q
    ||||||||||||||| ||| |||| |||||| ||| ||| ||| | ||| |||||||| ||||||||||||    
T  28281194 tgcagtgaaaaataagcaacggtttccacattttcgtgagcggatacggctaaagaagttagttcatgata 28281264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 6079776 - 6079963
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    |||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||    
T  6079776 gatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaacctggaata 6079875  T
Q  118 tagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||  || ||| ||| ||||| ||||||||||| ||||||          ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6079876 taggtacacttacaggaaaatctatggaagtagaagacac---------aatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtg 6079963  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 20430463 - 20430320
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||| | |||||    
T  20430463 gatgtagtgaaaaataagtaagggttcccacatcttcgtgaacgggtgcgggtaaagaagctagttcatgagagtaggattcgttttggaacatggaata 20430364  T
Q  118 tagacactctttcagaaaaatttatggaagtagtagacactatg 161  Q
    |||  |||||| | |  |||| |||||||| |||||||||||||    
T  20430363 taggtactcttacgggcaaatctatggaagcagtagacactatg 20430320  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 34728199 - 34728136
Alignment:
Q  12 cacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaaga 75  Q
    ||||| ||| ||||||||||||| |||||||| || ||||||| |||| ||||| |||||||||    
T  34728199 cacctcgattcagtgaaaaataagcaagggtttccgcatcttcatgaatgggtgtgggtaaaga 34728136  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 18859143 - 18859074
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||||||||| |  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  18859143 atgcagtaaaaaataaacaaggctctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 18859074  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 16290938 - 16291131
Alignment:
Q  12 cacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgt 111  Q
    ||||| |||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |    
T  16290938 cacctggatgtagtgaaaaataagcaacggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaactt 16291037  T
Q  112 agaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaa 211  Q
     ||||||||  || ||| ||| ||||| ||||||||||||||||||          ||||||||||||||||| ||||| || |||||||||||||||||    
T  16291038 ggaatataggtacacttacaggaaaatctatggaagtagtagacac---------aatgactaggaggaggatcaatttcatatgcctacaagaaactaa 16291128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 8178109 - 8178307
Alignment:
Q  4 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttt 103  Q
    ||||||| | ||| |||| |||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  8178109 tgcatcgccgcctggatgtagtgaaaaataagcaagggttcacgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttt 8178208  T
Q  104 tggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaa 203  Q
    |||||| | ||||||||  || ||| ||| ||||| ||||||   |||||||||          ||||||||||||||||| ||||| ||||||||||||    
T  8178209 tggaacttggaatataggtacacttacaggaaaatctatgga---agtagacac---------aatgactaggaggaggatcaatttcatgtgcctacaa 8178296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 45329549 - 45329362
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    |||| |||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| | | ||| |||||||||||||| | |||||    
T  45329549 gatgtagtgaaaaataagcaagggttcccacatctacgtaaacgggtgcgggtaaagaagctagttcattagagtaggattcgttttggaacttggaata 45329450  T
Q  118 tagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||  |||||| | |  |||| ||| ||| |||||||||||         |||| |||||||||||| |||||||||||||||||||| ||||||||    
T  45329449 taggtactcttacgggtaaatctatagaaatagtagacact---------atgattaggaggaggatcaattttatgtgcctacaagagactaagtg 45329362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 8560966 - 8560856
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||| |||| ||||  | |||||||||||| | |||||    
T  8560966 gatgcagtgaaaaataagcaagggttcccacatctttatgaacgggtgctggtaaagaagctagttaatgagaataagaatcgttttggaacatggaata 8560867  T
Q  118 tagacactctt 128  Q
    ||  |||||||    
T  8560866 tatgcactctt 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 27511952 - 27511883
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||||||||| |  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  27511952 atgcagtaaaaaataaacaaggatctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 27511883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 49350361 - 49350180
Alignment:
Q  24 gtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaatatagaca 123  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||  |    
T  49350361 gtgaaaaataagcaagggttcccgcatcttcatgaacgagtgcgggtaaagaagctagttcatgagaataggattcgttttggaacttggaatataggta 49350262  T
Q  124 ctctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    | ||| ||| ||||| ||||||||||||||||||          ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  49350261 cacttacaggaaaatctatggaagtagtagacac---------aatgactaggaggaggatcaatttcatgtgcctacaagaaactaagtg 49350180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 16538643 - 16538567
Alignment:
Q  23 agtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattc 99  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||| ||||||| |||| |||||    
T  16538643 agtgaaaaataagcaagggttcccacatcttcgtgaacgggtgcaagtaaagaagctaattcatgagaatataattc 16538567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 51442413 - 51442329
Alignment:
Q  4 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| | ||| |||| |||||||||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||||||||    
T  51442413 tgcatcgccgcctggatgtagtgaaaaataagcaagggttcccgcatctttgtgaacgggtgcgggtgaagaagctagttcatga 51442329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 27691852 - 27691807
Alignment:
Q  168 atgactaggaggaggattaattttatgtgcctacaagaaactaagt 213  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||    
T  27691852 atgactaagaggagaattaattttatgtgtctacaagaaactaagt 27691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 52136519 - 52136704
Alignment:
Q  23 agtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataat---agaattcgttttggaacgtagaatata 119  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||   || |||||||||||||| | |||||||    
T  52136519 agtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggaggattcgttttggaacttggaatata 52136618  T
Q  120 gacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    || || ||| ||| ||||| ||||||||||||||||||          ||||||||||||||||| ||||| || ||||||||||||||||||||    
T  52136619 gatacacttacaggaaaatctatggaagtagtagacac---------aatgactaggaggaggatcaatttcatatgcctacaagaaactaagtg 52136704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 51450674 - 51450472
Alignment:
Q  4 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagc--tagttcatgataatagaattcgt 101  Q
    ||||||| | ||| |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||  |||||||||| ||||| ||||||    
T  51450674 tgcatcgccgcctggatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctatagttcatgagaataggattcgt 51450575  T
Q  102 tttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctac 201  Q
    |||||||| | ||||||||  || ||| ||| ||||| |||| |||||||||||||          ||||||||||||||||| || |||||||||||||    
T  51450574 tttggaacttggaatataggtacacttacaggaaaatctatgtaagtagtagacac---------aatgactaggaggaggatcaa-tttatgtgcctac 51450485  T
Q  202 aagaaactaagtg 214  Q
    |||||||||||||    
T  51450484 aagaaactaagtg 51450472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9256461 - 9256648
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaatat 118  Q
    ||||| ||||||||||  |||||||||||||| ||  |||||||||||| ||||||| | |||||||||  ||||| ||| |||||||| | | ||||||    
T  9256461 atgcaatgaaaaataagtaagggttcccacatatttttgaacgggtgcgagtaaagatgttagttcatgtgaataggatttgttttggaccatggaatat 9256560  T
Q  119 agacactctttc-agaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    || | ||||  | || ||||| |||||||||| |||||| |         |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9256561 aggcgctctaacaagtaaaatctatggaagtattagacatt---------atgactaggaggaggactaattttatgtgcctacaagaaactaagtg 9256648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 15326098 - 15326143
Alignment:
Q  169 tgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||    
T  15326098 tgactaagaggaagattaattttatgtgccaacaagaaactaagtg 15326143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 15325956 - 15326026
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    |||||||| |||||||| |||||||  ||| |||||  |||||| ||| ||||||||||| ||||||||||    
T  15325956 gatgcagtaaaaaataagcaagggtctccaaatctttgtgaacgagtgtgggtaaagaagttagttcatga 15326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 27453060 - 27452873
Alignment:
Q  18 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 117  Q
    |||| |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||| |  || ||||||||||| || |  ||||    
T  27453060 gatgtagtgaaaaataagcaagggtttccacatcttcgtgaacgggtgtgggtaaagaagctagttcatgagagcaggattcgttttgggacatgtaata 27452961  T
Q  118 tagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    |||  ||||||   |  |||| ||||||||||||||||| |         ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27452960 taggtactcttgtgggtaaatctatggaagtagtagacatt---------atgaccaggaggaggattaattttatgtgcctacaagaaactaagtg 27452873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 16000430 - 16000604
Alignment:
Q  25 tgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaatatagacac 124  Q
    |||||||||| ||||||||| ||||||||| |||||| |||| ||||| ||||||||||||||| ||||   |||  ||||       |||||| |||||    
T  16000430 tgaaaaataagcaagggttctcacatcttcgtgaacgagtgcaggtaaggaagctagttcatgagaataagtttcactttg-------gaatatggacac 16000522  T
Q  125 tctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtga 215  Q
    | || ||  ||||| |||| ||||||||||||||         ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16000523 ttttacatgaaaatctatgcaagtagtagacact---------atgactaagaggaggattaattttatgtgcctaaaagaaactaagtga 16000604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14145277 - 14145346
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  14145277 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 14145346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 35672217 - 35672172
Alignment:
Q  168 atgactaggaggaggattaattttatgtgcctacaagaaactaagt 213  Q
    |||||||| |||||  |||||||||||||||||||||||| |||||    
T  35672217 atgactagaaggagacttaattttatgtgcctacaagaaattaagt 35672172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35672357 - 35672301
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaaga 75  Q
    |||||||||||||||| |||||||||||| |||||  || ||  |||||||||||||    
T  35672357 atgcagtgaaaaataagcaagggttcccaaatctttgtggacatgtgcgggtaaaga 35672301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 2078440 - 2078280
Alignment:
Q  12 cacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgt 111  Q
    ||||| |||| |||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |    
T  2078440 cacctggatgtagtgaaaattaagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaactt 2078341  T
Q  112 agaatatagacactctttcagaaaa----atttatggaagtagtagacactatgactagga 168  Q
      |||||||  || ||| ||| |||    || |||||||||||||||||| ||||||||||    
T  2078340 gaaatataggtacacttacaggaaaatctatctatggaagtagtagacacaatgactagga 2078280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 25300 - 25460
Alignment:
Q  4 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttt 103  Q
    |||||||||| || |||||||| | |||||| |||||||||  |||||||  ||||||||||||| |||||||| | |||||||| ||||  ||| ||||    
T  25300 tgcatcgtcagctggatgcagtaagaaataagcaagggttctgacatctttgtgaacgggtgcggataaagaagtttgttcatgagaataagatttgttt 25399  T
Q  104 tggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgact 164  Q
    |||||| | |||||| |||||||||   | ||||| |||||||| ||| ||||||||||||    
T  25400 tggaacatggaatattgacactcttatgggaaaatctatggaagcagtggacactatgact 25460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 440290 - 440472
Alignment:
Q  23 agtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaatatagac 122  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||| | ||  ||| |||||||||| | ||| | ||      
T  440290 agtgaaaaataagcaagggttcccacatcttcgtgaacgggtgagggtaaagaatctagttcatgagagtatgatttgttttggaacatggaacacaggt 440389  T
Q  123 actctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaagaaactaagtg 214  Q
    ||||||   | ||||| |||||||||||||||||||         |||||||||||||| || |||||||||||||||||||| ||||||||    
T  440390 actcttatgggaaaatctatggaagtagtagacact---------atgactaggaggagcatcaattttatgtgcctacaagagactaagtg 440472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 18570 - 18769
Alignment:
Q  4 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttt 103  Q
    ||||||| | ||| |||| |||||||||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||  | ||| ||| ||||    
T  18570 tgcatcgccgcctggatgtagtgaaaaataagcaagagttcccacatcttcttgaacgggtgtgggtaaagaagctagttcatg--agtaggatttgttt 18667  T
Q  104 tggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaattttatgtgcctacaa 203  Q
    ||||||   ||||||||  | |||| | |  |||| ||||||||||||||||||          |||| |||||| ||||| |||| |||||||||||||    
T  18668 tggaacacggaatataggtaatcttacgggtaaatctatggaagtagtagacac---------aatgattaggagaaggataaattatatgtgcctacaa 18758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 139876 - 139945
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  139876 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 139945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 317342 - 317411
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  317342 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 317411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 22846352 - 22846283
Alignment:
Q  19 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 88  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  22846352 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 22846283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 47438431 - 47438476
Alignment:
Q  168 atgactaggaggaggattaattttatgtgcctacaagaaactaagt 213  Q
    |||||||||| |||||| ||||||| |||||||| |||||||||||    
T  47438431 atgactaggatgaggataaattttacgtgcctacgagaaactaagt 47438476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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