View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_12 (Length: 653)
Name: NF11538_low_12
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_12 |
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| [»] scaffold0141 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 8448665 - 8449046
Alignment:
| Q |
15 |
aggaagctccaatcttaaccaaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttggatgacagcaggtctgtaatatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448665 |
aggaagctccaatcttaaccaaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttggatgacagcaggtctgtaatatc |
8448764 |
T |
|
| Q |
115 |
atcgatgagagcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattcggtgatgtct |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448765 |
atcgatgagagcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattcggtgatgtct |
8448864 |
T |
|
| Q |
215 |
atgtctcaaaccagcactaaaccatggtagatagtagatagctcagcaagtaaaatgtcttctgaattggggatgaatccagagaaaccggaaaggtagt |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448865 |
atgtctcgaaccagcactaaaccatggtagatagtagatagctcagcaagtaaaatgtcttctgaattggggatgaatccagagaaaccggaaaggtagt |
8448964 |
T |
|
| Q |
315 |
agcctgcagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8448965 |
agcctgcagaatttctaataaggcctctgaatccagctcgttgaggtgttcgtagacaactccaatccacgttgagaatgtg |
8449046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 313 - 649
Target Start/End: Original strand, 8449046 - 8449382
Alignment:
| Q |
313 |
gtagcctgcagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaa |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8449046 |
gtagcctgcagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccaagttgagaatgtggcacgagtgattgtaa |
8449145 |
T |
|
| Q |
413 |
cagttccacttgataaaacgctctagtatcaacagttccttgcttaatgacttcggacgaatttttgatggtgaaagatagcctgtttagagaccaaacc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8449146 |
cagttccacttgataaaacgctctagtatcaacagttccttgcttaatgacttcggacgaatttttgatggtgaaagatagcctgtttagagaccaaacc |
8449245 |
T |
|
| Q |
513 |
tgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8449246 |
tgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtg |
8449345 |
T |
|
| Q |
613 |
catagctttgaagaaaacaaaggaagtgagaaaaagg |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
8449346 |
catagctttgaagaaaacaaaggaagtgagaaaaagg |
8449382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 508 - 653
Target Start/End: Complemental strand, 8430170 - 8430025
Alignment:
| Q |
508 |
aaacctgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8430170 |
aaacctgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgca |
8430071 |
T |
|
| Q |
608 |
atgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatt |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8430070 |
atgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatt |
8430025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 125 - 410
Target Start/End: Complemental strand, 28046632 - 28046346
Alignment:
| Q |
125 |
gcagcataactgtgataattcatggctgggcctgcaatgaggtttaagcaaagaagtgagtcggtgtagcacacaaattcggtgatgtctatgtctcaaa |
224 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||| |||||| |||||||||||||| |||||| |||| ||||||||||| |||||||| | ||||| | |
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| T |
28046632 |
gcagcataagtgtgaaaattcatggctggtcctgtaatgagatttaagcaaagaagggagtcgttgtaacacacaaattcagtgatgtccaagtctcgag |
28046533 |
T |
|
| Q |
225 |
ccagcact-aaaccatggtagatagtagatagctcagcaagtaaaatgtcttctgaattggggatgaatccagagaaaccggaaaggtagtagcctgcag |
323 |
Q |
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|||| | | ||||| |||||||| | ||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||||||| |
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| T |
28046532 |
ccagaagttaaaccgtggtagattgcagagagctcagcaagtaaaatgtcttctgaattagagatgaaaccagagaaaccggataggtagtaacctgcag |
28046433 |
T |
|
| Q |
324 |
aatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgt |
410 |
Q |
| |
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||| ||| || ||||||||||| |||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| ||||||| |
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| T |
28046432 |
aatatctcatgaggcctctgaagccagctcgttgaggtgttccaagaaaactcccatccacgttaagaatgtggcacgattgattgt |
28046346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 512 - 649
Target Start/End: Original strand, 7382 - 7519
Alignment:
| Q |
512 |
ctgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgt |
611 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7382 |
ctgatttatgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccattaaagcaaagattaagcttgcaatgt |
7481 |
T |
|
| Q |
612 |
gcatagctttgaagaaaacaaaggaagtgagaaaaagg |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
7482 |
gcatagctttgaagaaaacaaaggaagtgagaaaaagg |
7519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 567 - 653
Target Start/End: Original strand, 4238600 - 4238686
Alignment:
| Q |
567 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatt |
653 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4238600 |
aggtaatctcaaactccatgaaagcaaaggttaagcttgcaatgtgcatagatttgaagaaaacaaaggaagtgagaaaaaggaatt |
4238686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 30913185 - 30913266
Alignment:
| Q |
349 |
agctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttccacttgataaaa |
430 |
Q |
| |
|
||||||||| |||||| ||||||| |||| || |||||||||||| ||| ||||||| ||||||||||||||||||| |
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|
| T |
30913185 |
agctcgttgcggtgtttctagacagctcctgtcaacgttgagaatggtgcaaaagtgattaggacagttccacttgataaaa |
30913266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 232 - 436
Target Start/End: Complemental strand, 31847953 - 31847749
Alignment:
| Q |
232 |
taaaccatggtagatagtagatagctcagcaagtaaaatgtcttctgaattggggatgaatccagagaaaccggaaaggtagtagcctgcagaatttcta |
331 |
Q |
| |
|
||||||||| ||||||| | |||||| || |||| ||||| | |||||| || ||||||||||||||||| ||||| ||| | ||||||||||||||| |
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|
| T |
31847953 |
taaaccatgagagatagttaagagctcaacatgtaatatgtcatatgaattaggaatgaatccagagaaaccagaaagatagaaacctgcagaatttcta |
31847854 |
T |
|
| Q |
332 |
ataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttccacttgataaaac |
431 |
Q |
| |
|
|| || |||| || ||| ||| ||| || ||||||||| | |||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| |
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|
| T |
31847853 |
atgagacctccaaagccatctcattgtggagttcctagatagctcccctccacgttgagaatggtgcaggagtgattgagacagttccacttgataaaac |
31847754 |
T |
|
| Q |
432 |
gctct |
436 |
Q |
| |
|
|||| |
|
|
| T |
31847753 |
actct |
31847749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 11969346 - 11969145
Alignment:
| Q |
232 |
taaaccatggtaga--tagtagatagctcagcaagtaaaatgtcttctgaattggggatgaatccagagaaaccggaaaggtagtagcctgcagaatttc |
329 |
Q |
| |
|
|||||||||||||| |||| || ||||||| |||||| || | |||||||| || ||||| ||||| ||||| ||| ||||| | |||||| |||||| |
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|
| T |
11969346 |
taaaccatggtagacatagttgagagctcagtaagtaatatcttatctgaattaggaatgaacccagaaaaaccagaatggtagaaacctgcaaaatttc |
11969247 |
T |
|
| Q |
330 |
taataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttccacttgataaa |
429 |
Q |
| |
|
||| || |||| || ||||||||||| |||||||||||||| |||| ||| ||||||||||| ||| || ||||| | ||| |||||| ||||||| |
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|
| T |
11969246 |
taacgagacctccaaaaccagctcgttgtggtgttcctagacagctcccatctacgttgagaatagtgcaggaatgattttgacaattccacatgataaa |
11969147 |
T |
|
| Q |
430 |
ac |
431 |
Q |
| |
|
|| |
|
|
| T |
11969146 |
ac |
11969145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 4348784 - 4348842
Alignment:
| Q |
35 |
aaaaaatcagcgcattggttaccctcccgcagagtgtggaagattgaagtattgttgga |
93 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||| |||||| |||| |||||||| |
|
|
| T |
4348784 |
aaaaaatcaacgcattgattaccctcccgcaaagtgtgaaagattaaagtgttgttgga |
4348842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 40557363 - 40557468
Alignment:
| Q |
269 |
atgtcttctgaattggggatgaatccagagaaaccggaaaggtagtagcctgcagaatttctaataaggcctctgaatccagctcgttgaggtgttccta |
368 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| ||||||| | |||||| |||||||||| |||| |||||| |||||| ||| |||||||||| |
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|
| T |
40557363 |
atgttttctgaattagggatgaacccagagaaaccataaaggtaaaaacctgcaaaatttctaatgaggcttctgaagtcagctcattgcggtgttccta |
40557462 |
T |
|
| Q |
369 |
gacaac |
374 |
Q |
| |
|
| |||| |
|
|
| T |
40557463 |
gccaac |
40557468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 40557122 - 40557184
Alignment:
| Q |
29 |
ttaaccaaaaaatcagcgcattggtta-ccctcccgcagagtgtggaagattgaagtattgttg |
91 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
40557122 |
ttaaacaaaaaatcaacgcattggttacccctcccgca-tgtgtgaaagattgaagtattgttg |
40557184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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