View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_120 (Length: 226)

Name: NF11538_low_120
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_120
NF11538_low_120
[»] chr4 (1 HSPs)
chr4 (12-213)||(4890263-4890464)
[»] chr3 (3 HSPs)
chr3 (35-107)||(15674059-15674131)
chr3 (62-197)||(25021914-25022047)
chr3 (138-193)||(15686583-15686638)
[»] chr8 (1 HSPs)
chr8 (36-177)||(28771859-28771999)
[»] chr1 (1 HSPs)
chr1 (62-197)||(32972848-32972983)
[»] scaffold0039 (2 HSPs)
scaffold0039 (24-90)||(103579-103645)
scaffold0039 (137-211)||(103689-103764)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 4890263 - 4890464
Alignment:
Q  12 agaagcaaaggccacgaaacataattgtagcaagctttaagacactttggaacatcattttagatattcaagaagaacatcctatttcttgacattggta 111  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4890263 agaagccaaagccacgaaacataattgtagcaagctttaagacactttggaacatcattttagatattcaagaagaacatcctatttcttgacattggta 4890362  T
Q  112 cctaggtgatgagattannnnnnnncatctttgatggagagacttaaatctttcatgtaaatatcataacccttttctaacagttgcccagactcaaaat 211  Q
    ||| |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4890363 ccttggtgatgagattattttttttcatctttgatggagagacttaaatctttcatgtaaatatcataacccttttctaacagttgcccagactcaatat 4890462  T
Q  212 tg 213  Q
    ||    
T  4890463 tg 4890464  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 15674059 - 15674131
Alignment:
Q  35 attgtagcaagctttaagacactttggaacatcattttagatattcaagaagaacatcctatttcttgacatt 107  Q
    ||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  15674059 attgtagcaagctttgagacacttttcaacatcattttggatattcaagaagaacatcatatttcttgacatt 15674131  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 25021914 - 25022047
Alignment:
Q  62 aacatcattttagatattcaagaagaacatcctatttcttgacattggtacctaggtgatgagattannnnnnnncatctttgatggagagacttaaatc 161  Q
    ||||||||||| |||| |||| |||||| ||| |||||| ||||||| ||||| |||||||||| ||        ||||||||||||||| |||||||||    
T  25021914 aacatcatttttgatactcaacaagaacgtcccatttctcgacattgctaccttggtgatgagactactttttc-catctttgatggagatacttaaatc 25022012  T
Q  162 tttcatgtaaatatcataacccttttctaacagttg 197  Q
    |||||||| ||||||||||| |||||| ||||||||    
T  25022013 tttcatgt-aatatcataactcttttccaacagttg 25022047  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 15686583 - 15686638
Alignment:
Q  138 atctttgatggagagacttaaatctttcatgtaaatatcataacccttttctaaca 193  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  15686583 atctttgatggagagacttaaatcttacatgtgaatatcataacccttttctaaca 15686638  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 28771859 - 28771999
Alignment:
Q  36 ttgtagcaagctttaagacactttggaacatcattttagatattcaagaagaacatcctatttcttgacattggtacctaggtgatgagattannnnnnn 135  Q
    |||| ||||||||| ||| | |||| ||||||||||| || |||||| |||||| |  ||||||||||||||||||||| | ||||| |||||           
T  28771859 ttgtggcaagctttgagatattttgcaacatcattttggacattcaacaagaacgttttatttcttgacattggtaccttgatgatgtgatta-tttttc 28771957  T
Q  136 ncatctttgatggagagacttaaatctttcatgtaaatatca 177  Q
     ||| |||||||||||||||||||| ||||| || |||||||    
T  28771958 tcatatttgatggagagacttaaatatttcaagtgaatatca 28771999  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 32972983 - 32972848
Alignment:
Q  62 aacatcattttagatattcaagaagaacatcctattt-cttgacattggtacctaggtgatgagattannnnnnnncatctttgatggagagacttaaat 160  Q
    ||||||||||| |||||| || || |||||| ||||| |||||||||||||||| ||| |||||| ||        ||||||| ||||| ||||||||||    
T  32972983 aacatcattttggatattaaacaataacatcttattttcttgacattggtaccttggttatgagaatattttttc-catctttcatggaaagacttaaat 32972885  T
Q  161 ctttcatgtaaatatcataacccttttctaacagttg 197  Q
    |||||| ||||||||| || |  |||||||| |||||    
T  32972884 ctttcaagtaaatatcctatcttttttctaaaagttg 32972848  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 103579 - 103645
Alignment:
Q  24 cacgaaacataattgtagcaagctttaagacactttggaacatcattttagatattcaagaagaaca 90  Q
    |||||||||| ||||||||||| ||||||||| |||   |||||||||| ||||||||| |||||||    
T  103579 cacgaaacatcattgtagcaagatttaagacatttttccacatcattttggatattcaacaagaaca 103645  T

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Target: scaffold0039; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 103689 - 103764
Alignment:
Q  137 catctttgatggagagacttaaatctttcatgtaaatatcataacccttttctaacagttg-cccagactcaaaat 211  Q
    ||||||||| ||||||| |||||||||||  || |||||||||||| |||||| | ||||| |||| |||||||||    
T  103689 catctttgacggagagatttaaatctttctggtgaatatcataacctttttcttaaagttgtcccaaactcaaaat 103764  T

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