View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_121 (Length: 226)
Name: NF11538_low_121
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_121 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 29024422 - 29024225
Alignment:
| Q |
25 |
agtttatttttgttatgagtattttgattatgtatggaccatgggatcctctcattacttatgtgtttcccaaaccaagttccctttgtttggtgtgttt |
124 |
Q |
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| T |
29024422 |
agtttatttttgttgtgagtattttgattatgtatggaacatgggatcctc--attacttatgt--ttcccaaaccaagtcccctttgtttggcatgttt |
29024327 |
T |
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| Q |
125 |
ttgttgaaataaaagtggattgaattccatgcttaaagatggatcccaataaagcttgtaaggaaggaagacaaaattaaacaatttttgcttgtaaaac |
224 |
Q |
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| T |
29024326 |
ttgttgaaataaaagtggattgaattccatgcttaaagatggatcccaataaagcttgtaaggaaggaagacaaaattaaacaatttttgcttgtaaaac |
29024227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 36066972 - 36066822
Alignment:
| Q |
75 |
ctcattacttatgtgtttcccaaaccaagttccc-tttgtttggtgtgtttttgttgaaataaaa-gtggattgaattccatgcttaaagatggatccca |
172 |
Q |
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| T |
36066972 |
ctcattacatatgtgcttcccaacccaagttcccctttgtttggtttgtttttgttgaaataaaaagtggattgaattccacgcttaaagatggatacca |
36066873 |
T |
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| Q |
173 |
ataaagcttgtaaggaaggaagacaaaattaaacaatttttgcttgtaaaacct |
226 |
Q |
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| T |
36066872 |
agaaagcttgtaaggaagaca---aaaattaaacaatttttgcttgtaaaacct |
36066822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 47508201 - 47508268
Alignment:
| Q |
76 |
tcattacttatgtgtttcccaaaccaagttccctttgtttggtgtg-tttttgttgaaataaaagtgg |
142 |
Q |
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| T |
47508201 |
tcattacctatgtgctgcccaacccaagttccctttctttggtatgttttttgttgaaataaaagtgg |
47508268 |
T |
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