View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_15 (Length: 635)
Name: NF11538_low_15
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 4132690 - 4133308
Alignment:
| Q |
1 |
acgaactacaatcacaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132690 |
acgaactacaatcgcaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccat |
4132789 |
T |
|
| Q |
101 |
aaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacgtgctgcgccagaatacaagaccgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
4132790 |
aaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacatgctgcgccaaaatacaagaccgca |
4132889 |
T |
|
| Q |
201 |
aaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132890 |
aaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccctt |
4132989 |
T |
|
| Q |
301 |
gttgctaattccacaaatctggaagcaacatatgttgcaacggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaat |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132990 |
gttgctaattccacaaatctggaagcaacatatgttgcaatggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaat |
4133089 |
T |
|
| Q |
401 |
tagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaaccaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133090 |
tagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaaccaa |
4133189 |
T |
|
| Q |
501 |
tac-aattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatctt |
599 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133190 |
tacaaattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatctt |
4133289 |
T |
|
| Q |
600 |
tctaatctctcaaagttac |
618 |
Q |
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||||||||||||||||||| |
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| T |
4133290 |
tctaatctctcaaagttac |
4133308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 620
Target Start/End: Complemental strand, 41102145 - 41102025
Alignment:
| Q |
503 |
caattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctt |
599 |
Q |
| |
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|||||||||||| |||| |||| |||||||||||| | || ||||| |||| |||||||||||| || || ||||||||||||| ||||||| || |
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| T |
41102145 |
caattcatggctcatcctaggacctctcatttacaagatgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagcta |
41102046 |
T |
|
| Q |
600 |
tctaatctctcaaagttactg |
620 |
Q |
| |
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| T |
41102045 |
cccaatctctcaaagttactg |
41102025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
221 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
297 |
Q |
| |
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||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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