View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_16 (Length: 634)

Name: NF11538_low_16
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_16
NF11538_low_16
[»] chr5 (5 HSPs)
chr5 (159-616)||(35508839-35509297)
chr5 (1-139)||(35509294-35509432)
chr5 (426-485)||(35522705-35522764)
chr5 (267-309)||(39153939-39153981)
chr5 (431-477)||(35552286-35552332)
[»] chr3 (5 HSPs)
chr3 (429-501)||(31653340-31653412)
chr3 (431-500)||(31703685-31703754)
chr3 (432-477)||(31710084-31710129)
chr3 (432-477)||(31011207-31011252)
chr3 (267-295)||(44800840-44800868)
[»] chr4 (2 HSPs)
chr4 (339-403)||(48362736-48362800)
chr4 (267-309)||(48362821-48362863)
[»] chr8 (1 HSPs)
chr8 (336-408)||(20081456-20081528)
[»] chr6 (1 HSPs)
chr6 (1-41)||(10666640-10666680)
[»] chr2 (1 HSPs)
chr2 (267-295)||(44643234-44643262)


Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 159 - 616
Target Start/End: Complemental strand, 35509297 - 35508839
Alignment:
Q  159 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactattattccatttccatgaaaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35509297 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactatcattccatttccatgaaaa 35509198  T
Q  259 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaa-tgacattttgctacaaattttcctttttaattgtgat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35509197 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaaatgacattttgttacaaattttcctttttaattgtgat 35509098  T
Q  358 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35509097 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 35508998  T
Q  458 agctccatacatccacccaagatgtggcttgaaatttgtggatttgacgcgtgtcgccctagggtacaccctgagtatannnnnnngtgtgaatctggaa 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  35508997 agctccatacatccacccaagatgtggcttgaaatttgtggatttgacgcgtgtcgccctagggtacaccctgagtatatttttttgtgtgaatctggaa 35508898  T
Q  558 gactaacagtttgaatcagataaaccatgggagactgttaggtactaaaatttgattat 616  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35508897 gagtaacagtttgaatcagataaaccataggagactgttaggtactaaaatttgattat 35508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 35509432 - 35509294
Alignment:
Q  1 agacaccaataataatttgaaaaagtagaagtaattgaatgggagtacaccatgtgttgatgttatacaccgacacgccttcaatctaaagtgtcactgc 100  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35509432 agacaccgataataatttgaaaaagtagaagtcattgaatgggagtacaccatgtgttgatgttatacaccgacgcgccttcaatctaaagtgtcactgc 35509333  T
Q  101 cacattattcaccaatctcttggtagcaaaaatttcatg 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35509332 cacattattcaccaatctcttggtagcaaaaatttcatg 35509294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 485
Target Start/End: Complemental strand, 35522764 - 35522705
Alignment:
Q  426 tccctaacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggc 485  Q
    ||||| |||||||| || ||||| |||||||||||||||||||||||||| | |||||||    
T  35522764 tccctgacctgcatgttaaatgcgaccatctgagctccatacatccaccctatatgtggc 35522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 39153981 - 39153939
Alignment:
Q  267 actttctaacaacattttcaatttttactctatatgtgggtgg 309  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  39153981 actttctaacaatattttcaatttttactttatatgtgggtgg 39153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 35552332 - 35552286
Alignment:
Q  431 aacctgcatattgaatgcaaccatctgagctccatacatccacccaa 477  Q
    ||||||||| |||||||||||||| ||||||||||  ||||||||||    
T  35552332 aacctgcatgttgaatgcaaccatttgagctccatgaatccacccaa 35552286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 31653412 - 31653340
Alignment:
Q  429 ctaacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggatt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||    
T  31653412 ctaacctgcatattgaatgcaaccatctgagctccatacatccaccctaaatgtggcctaaaatttgtggatt 31653340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 500
Target Start/End: Complemental strand, 31703754 - 31703685
Alignment:
Q  431 aacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggat 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | | ||||| | ||||||| ||||    
T  31703754 aacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgaggat 31703685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 31710129 - 31710084
Alignment:
Q  432 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 477  Q
    |||||||| || |||||||||||||||||||||| |||||||||||    
T  31710129 acctgcatgttaaatgcaaccatctgagctccatgcatccacccaa 31710084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 31011207 - 31011252
Alignment:
Q  432 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 477  Q
    |||||||| || |||||||||||||||||||||| |||||| ||||    
T  31011207 acctgcatgttaaatgcaaccatctgagctccatgcatccaaccaa 31011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 44800868 - 44800840
Alignment:
Q  267 actttctaacaacattttcaatttttact 295  Q
    |||||||||||||||||||||||||||||    
T  44800868 actttctaacaacattttcaatttttact 44800840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 48362800 - 48362736
Alignment:
Q  339 tttcctttttaattgtgatagagagaaaatgaaagctaatttgaaagaaagcatttccgaaaaca 403  Q
    |||||| |||||||||||||||||||| ||| ||||||| | || |||| ||||||| |||||||    
T  48362800 tttcctctttaattgtgatagagagaagatggaagctaactagagagaatgcatttctgaaaaca 48362736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 48362863 - 48362821
Alignment:
Q  267 actttctaacaacattttcaatttttactctatatgtgggtgg 309  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||    
T  48362863 actttctaacaacattttcaattttcactttataggtgggtgg 48362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 20081528 - 20081456
Alignment:
Q  336 aattttcctttttaattgtgatagagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaa 408  Q
    |||||| |||| ||||||||||||| |||| ||  ||||||| | || |||| ||||||||||||||| ||||    
T  20081528 aatttttctttctaattgtgatagacagaatatagaagctaactagagagaatgcatttccgaaaacaacgaa 20081456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10666680 - 10666640
Alignment:
Q  1 agacaccaataataatttgaaaaagtagaagtaattgaatg 41  Q
    |||||| ||||||||||||| ||| ||||||||||||||||    
T  10666680 agacactaataataatttgagaaaatagaagtaattgaatg 10666640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 44643234 - 44643262
Alignment:
Q  267 actttctaacaacattttcaatttttact 295  Q
    |||||||||||||||||||||||||||||    
T  44643234 actttctaacaacattttcaatttttact 44643262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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