View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_19 (Length: 602)
Name: NF11538_low_19
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 165 - 398
Target Start/End: Complemental strand, 10408643 - 10408410
Alignment:
| Q |
165 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagnnnnnnnnngttatccattcatatatcataattaagcattaaattgattttg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10408643 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagttttttt--gctatccattcatatatcataattaagcattaaattgattttg |
10408546 |
T |
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| Q |
265 |
tggtggatagttaataaatttgagataatagtttttt--agagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacaca |
362 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10408545 |
tggtggatagttaataaatttgagataatagttttttagagagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacaca |
10408446 |
T |
|
| Q |
363 |
atccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
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|||||||||||| ||||| | |||||| |||||||| |
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| T |
10408445 |
atccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 10408836 - 10408725
Alignment:
| Q |
30 |
ttaatccaatggccacatctatctaaatctgtatatttttgtatacaaagcgttaattttctcatcaaagaaggcaaagagtttgtttaacgtacaatac |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||| |
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| T |
10408836 |
ttaatccaatggccacatctatctaaatctgtatatttttgtatacaaagcgttacttttctcatcaaagaaggcaaagaatttgtttaacatataatac |
10408737 |
T |
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| Q |
130 |
atattgctaaaa |
141 |
Q |
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|||||||||||| |
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| T |
10408736 |
atattgctaaaa |
10408725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 459 - 537
Target Start/End: Complemental strand, 10408367 - 10408289
Alignment:
| Q |
459 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
537 |
Q |
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| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacaccctcaccc |
10408289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 537
Target Start/End: Complemental strand, 10391625 - 10391547
Alignment:
| Q |
459 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
537 |
Q |
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| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaagctcttagggttgatatacacccccaccc |
10391547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 10403134 - 10403070
Alignment:
| Q |
459 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgat |
523 |
Q |
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| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaagctattagggttgat |
10403070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
354 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 593
Target Start/End: Complemental strand, 10408273 - 10408236
Alignment:
| Q |
556 |
ctcccatcatcaaggaagtgatctggttcatctcactc |
593 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |
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| T |
10408273 |
ctcctatcatcaaggaagtgatctggttcatcccactc |
10408236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
345 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
345 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
351 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
348 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
398 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
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| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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