View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_21 (Length: 580)
Name: NF11538_low_21
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 36 - 534
Target Start/End: Original strand, 30055025 - 30055542
Alignment:
| Q |
36 |
acagcgtattctacgatactattcagtattcggggttccacggaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag |
135 |
Q |
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| T |
30055025 |
acagcgtattctacgatactattcagtattcggggttccacgaaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag |
30055124 |
T |
|
| Q |
136 |
acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30055125 |
acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct |
30055224 |
T |
|
| Q |
236 |
tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataa----------------------tctgtcttctttt |
313 |
Q |
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| T |
30055225 |
tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataatggaatctggtaaattgctgagtctgtcttctttt |
30055324 |
T |
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| Q |
314 |
cagttctcttcttcttccttttgggtttgtgtggaacaagaatcattgctacagagtaaaatcgatcgagagtagcagaatgaatgataaggtcactgtt |
413 |
Q |
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| T |
30055325 |
cagttctcttcttcttccttttgggtttgtgtggaacaagaatcattgctacagagtaaaatcgatcgagagtagcagaatgaatgataaggtcactgtt |
30055424 |
T |
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| Q |
414 |
cttggaactaataataatccggtttctctgcacttaaaccggttctaagaccggaacaacaggatgaatatgtgtttcctttcttgttttttggtcgaaa |
513 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30055425 |
cttggaac---taataatccggtttctctgcacttaaaccggttctaagaccggaacaacaggatgtatatgtgtttcctttcttgttttttggtcgaaa |
30055521 |
T |
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| Q |
514 |
ttgacaccatgtatgtttttt |
534 |
Q |
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||||||||||||||||||||| |
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| T |
30055522 |
ttgacaccatgtatgtttttt |
30055542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 8400489 - 8400584
Alignment:
| Q |
206 |
tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat |
301 |
Q |
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||||||||| |||||||||| | |||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||||||| ||||||||| |
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| T |
8400489 |
tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataat |
8400584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 5367737 - 5367622
Alignment:
| Q |
187 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
286 |
Q |
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||||| |||||||||||||||| ||||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || ||||| |
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| T |
5367737 |
tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5367638 |
T |
|
| Q |
287 |
aatgtcatggataatc |
302 |
Q |
| |
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||||| ||||| |||| |
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| T |
5367637 |
aatgtgatggagaatc |
5367622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 5362521 - 5362411
Alignment:
| Q |
187 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
286 |
Q |
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||||| |||||||||| ||||||| ||| |||| |||| ||||||| | | ||||||||||||||||||||||||||||| |||| ||| || ||||| |
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| T |
5362521 |
tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagag |
5362422 |
T |
|
| Q |
287 |
aatgtcatgga |
297 |
Q |
| |
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||||| ||||| |
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| T |
5362421 |
aatgtgatgga |
5362411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 5374285 - 5374181
Alignment:
| Q |
193 |
ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtc |
292 |
Q |
| |
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|||||||||||||||||| ||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || |||||||||| |
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| T |
5374285 |
ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg |
5374186 |
T |
|
| Q |
293 |
atgga |
297 |
Q |
| |
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||||| |
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| T |
5374185 |
atgga |
5374181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 5356089 - 5355979
Alignment:
| Q |
187 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
286 |
Q |
| |
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||||| ||||||||||||||| ||||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || ||||| |
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| T |
5356089 |
tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5355990 |
T |
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| Q |
287 |
aatgtcatgga |
297 |
Q |
| |
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||||| ||||| |
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| T |
5355989 |
aatgtgatgga |
5355979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 8400655 - 8400695
Alignment:
| Q |
328 |
ttccttttgggtttgtgtggaacaagaatcattgctacaga |
368 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||| |
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| T |
8400655 |
ttccttttgggtttgtgtggaagaagaatcattgctgcaga |
8400695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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