View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_23 (Length: 548)
Name: NF11538_low_23
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 26397357 - 26397053
Alignment:
| Q |
16 |
aaaatcattgtaaacaatatcggccactcacttaagatctgaaggttttgatctgttacagcgtcctattctaacattaggaaattcagatctgaaaagc |
115 |
Q |
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| T |
26397357 |
aaaatcattgtaaacaatatcggccactcacttaagatctgaaggttttgatctgttacagcgtcctattctaacattaggaaattcagatctgaaaagc |
26397258 |
T |
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| Q |
116 |
aggggctctcaacccctacccacatgccacaacctcaa-atatatcggtatactatcaacaaatttgttttttcttttaaggatatcaacaaagattata |
214 |
Q |
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| T |
26397257 |
aggggctctcaacccctacccacatgccacaacctcaacatatatcggtatactatcaacaaatttgttttttcttttaaggatatcaacaaagattata |
26397158 |
T |
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| Q |
215 |
catgtatatgaacatgtacacatgcgcgagcgcacacataattatatttgagttgtgttgtttaaatacaaattttaagacatctatgttctctcacttt |
314 |
Q |
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| T |
26397157 |
catgtatataaac----acacatgcgcgagcgcacacataattatatttgagttgtgttgtttaaatacaaattttaagacatctatgttctctcacttt |
26397062 |
T |
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| Q |
315 |
ttatcttat |
323 |
Q |
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|||| |||| |
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| T |
26397061 |
ttattttat |
26397053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 367 - 541
Target Start/End: Complemental strand, 26397008 - 26396834
Alignment:
| Q |
367 |
acattatttttatcatgtatgatatattatttttaacacacaaaccctaattatgaatttttaaacaacaatttaggcatatgactcattatttagtaca |
466 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26397008 |
acattatttttatcatgtatgatatattatttttaatacacaaaccctaattatgaatttttaaacaacaatttaggcatatgactaattatttagtaca |
26396909 |
T |
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| Q |
467 |
aaaatattgttataaatactagtaagcatttcaacatacctcttattttgtgcttcagcaaccagtttcatctca |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
26396908 |
aaaatattgttataaatactagtaagcatttcaacatacctcttattttgtgcttcagcaacaagtttcttctca |
26396834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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