View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_24 (Length: 528)
Name: NF11538_low_24
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 10057448 - 10056941
Alignment:
| Q |
1 |
tctttacattagagtatcaagaaaccaatttttatgta---------------attaaaaatggcctaagtagggtacc--ctcaatcaaaacccataac |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10057448 |
tctttacattagagtatcaagaaaccaatttttatgtattattattggattggattaaaaatggcctaagtagggtacctcctcaatcaaaacccataac |
10057349 |
T |
|
| Q |
84 |
gtgagaggttggatacaattcacttttcccaaatctaatgttgttcctatctcttaatatgaaccacttgaatttttgatgacgttaactgataaggtat |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057348 |
gtgagaggttggatacaattcacttttcccaaatctaatgttgtccctatctcttaatatgaaccacttgaatttttgatgacgttaactgataaggtat |
10057249 |
T |
|
| Q |
184 |
tttgtccctactgtttgtttggatcctgtcatcctcaaattacaatcccaattcacgacaacaataccatcaaaaagttactcacacacctatgtcattt |
283 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057248 |
tttgtccctactgtttgtttggatcctgtcatcctcaaattacaatcccaattcacgacaacaataccatcaaaaagttactcacacacctatgtcattt |
10057149 |
T |
|
| Q |
284 |
tccacaatt--ttttcattgcaacaagacaattttccagatttgttacagttacacattttagcttttcacttttcagccaactatatttaacagaatgt |
381 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057148 |
tccacaattttttttcattgcaacaagacaattttccagatttgttacagttacacattttagcttttcacttttcagccaactatatttaacagaatgt |
10057049 |
T |
|
| Q |
382 |
cacgagcttctgtcaacagaaacaggttactattattatcctaagattcaaacataaaaaacttgatgctcttcaatactatgtgctctgctacaaatat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057048 |
cacgagcttctgtcaacagaaacaggttactattattattctaagattcaaacataaaaaacttgatgctcttcaatactatgtgctctgctacaaatat |
10056949 |
T |
|
| Q |
482 |
atttccgg |
489 |
Q |
| |
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|||||||| |
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| T |
10056948 |
atttccgg |
10056941 |
T |
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