View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_25 (Length: 523)
Name: NF11538_low_25
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 29248671 - 29248366
Alignment:
| Q |
16 |
tatgtcataagagagaccagattcttctccttgattcatccaaacaactgcataggtatctttaaatctatcatggtaatagccataggcgaacgcctca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
29248671 |
tatgtcataagagagaccagattcttctccttgattcatcaaaacaactgcataggtatcttcaaatctatcatggtaataaccataggcgaacgcctca |
29248572 |
T |
|
| Q |
116 |
cccttgaacccaattgcttttgcctcatcatgggttatttcaaccattttttctgcaacctacaacaacaacaacaaaaataagatttnnnnnnnnnnnt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
29248571 |
cccttgaacccaattgcttttgcctcatcatgggttatttcaaccattttttctgcaacctacaacaacaacaacaaaaataagatat-aaaaaaataat |
29248473 |
T |
|
| Q |
216 |
gaaaatggtaatgtccatagatacttagtacttacagaatactttctcttgaatcctagctcatgaataagttcaatatacttcctcttcccctcctcct |
315 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29248472 |
gaaaatagtgatgtccatatatacttagtacttacagaatattttctcttgaatcctagctcatgaataagttcaatatacttcctcttcccctcctcct |
29248373 |
T |
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| Q |
316 |
tcacctc |
322 |
Q |
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|||||| |
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| T |
29248372 |
ccacctc |
29248366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 29248353 - 29248310
Alignment:
| Q |
398 |
atcattaaactc--gggaatgggggaggttcacatgcacttcct |
439 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29248353 |
atcattaaactcaggggaatgggggaggttcacatgcacttcct |
29248310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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