View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_28 (Length: 508)
Name: NF11538_low_28
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 3895167 - 3895636
Alignment:
| Q |
17 |
atgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagc |
116 |
Q |
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| T |
3895167 |
atgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagc |
3895266 |
T |
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| Q |
117 |
tgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaagga |
216 |
Q |
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| T |
3895267 |
tgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaagga |
3895366 |
T |
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| Q |
217 |
gctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgt |
316 |
Q |
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| T |
3895367 |
gctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgt |
3895466 |
T |
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| Q |
317 |
gggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaagnnnnnnnnnnnnnnnnnnnnncgtggtagtggtggttctggtgtagt |
416 |
Q |
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| T |
3895467 |
gggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag---gatgatgatgatgatgatcgtggtagtggtggttctggtgtagt |
3895563 |
T |
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| Q |
417 |
agtagatgatggtgttcatgaattggggagtcagcgttatggtcagagtacgggttatggccagagtaagggt |
489 |
Q |
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| T |
3895564 |
agtagatgatggtgttcatgaattggggagtcagcgttatggccagagtacgggttatggccagagtaagggt |
3895636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 3895139 - 3895265
Alignment:
| Q |
55 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
154 |
Q |
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|||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||| ||||| ||||||| |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
155 |
atgatgcaaaggaaagaaccaaggaag |
181 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaag |
3895265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
118 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
181 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 28702740 - 28702684
Alignment:
| Q |
391 |
cgtggtagtggtggttctggtgtagtagtagatgatggtgttcatgaattggggagt |
447 |
Q |
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| T |
28702740 |
cgtggtagtggttgtgctggtgtggtagtagatgagcatgttcatgaattgaggagt |
28702684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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