View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_29 (Length: 506)

Name: NF11538_low_29
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_29
NF11538_low_29
[»] chr2 (19 HSPs)
chr2 (208-477)||(31362445-31362714)
chr2 (241-379)||(31257790-31257928)
chr2 (256-368)||(31376722-31376834)
chr2 (256-373)||(31283570-31283687)
chr2 (280-473)||(31416418-31416608)
chr2 (208-379)||(31310082-31310253)
chr2 (272-369)||(31294993-31295090)
chr2 (21-157)||(31416113-31416252)
chr2 (272-373)||(31389007-31389108)
chr2 (45-167)||(31295241-31295363)
chr2 (42-143)||(31389170-31389271)
chr2 (54-143)||(31310519-31310608)
chr2 (31-148)||(31258069-31258192)
chr2 (21-87)||(31283896-31283965)
chr2 (54-137)||(31376936-31377019)
chr2 (54-135)||(31362837-31362918)
chr2 (402-470)||(31388928-31388996)
chr2 (396-475)||(31257685-31257764)
chr2 (402-476)||(31294871-31294945)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 208 - 477
Target Start/End: Complemental strand, 31362714 - 31362445
Alignment:
Q  208 tatattttatgaaatgtatgtgtagtttagaagatttttcagtacttggctgataactctcaattgtat----atttagagaaagctcttgaagttatag 303  Q
    ||||||| |||| |||| ||||||||||||||| |||||||||||||  |||||| |||||||||||||    |||||||||||||||||||||||||||    
T  31362714 tatatttgatgacatgtgtgtgtagtttagaagttttttcagtacttatctgatagctctcaattgtatgtatatttagagaaagctcttgaagttatag 31362615  T
Q  304 ccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactgggttacgcctaccattcccttaccgattgtagttaa 403  Q
    | ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||| ||   |   || ||||  ||    
T  31362614 ctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactggtttacgcctcccataccgaaa---atcgtagagaa 31362518  T
Q  404 caatgtcacttgtgactgctctattcctggtgagaacttctgccacgttgtttcaatgtaagtctcttttccgt 477  Q
     |||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||    
T  31362517 taatgtcacctgtgactgctctattcctggtgacaacttctgccatgttgttgcaatgtaagtct-ttttccgt 31362445  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 379
Target Start/End: Complemental strand, 31257928 - 31257790
Alignment:
Q  241 atttttcagtacttggctgataactctcaattgtatatttagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacat 340  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||     
T  31257928 atttttcagtacttagctgatagctctcaattgtatatttagagaaagttcttgaagttatagctaaatcacttggtaagaaagattggaacttcgacac 31257829  T
Q  341 tgatccatgcagcaacaaacctaactgggttacgcctac 379  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  31257828 tgatccatgcagcaacaaacctaactgggctacacctac 31257790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 31376834 - 31376722
Alignment:
Q  256 gctgataactctcaattgtatatttagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaa 355  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31376834 gctgatagctctcaattgtatatttagagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaa 31376735  T
Q  356 caaacctaactgg 368  Q
    |||||||||||||    
T  31376734 caaacctaactgg 31376722  T

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Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 256 - 373
Target Start/End: Complemental strand, 31283687 - 31283570
Alignment:
Q  256 gctgataactctcaattgtatatttagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaa 355  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31283687 gctgatagctctcaattgtatatttagagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaa 31283588  T
Q  356 caaacctaactgggttac 373  Q
    ||||||||| ||| ||||    
T  31283587 caaacctaaatggtttac 31283570  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 280 - 473
Target Start/End: Original strand, 31416418 - 31416608
Alignment:
Q  280 tagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactgggttacgcctac 379  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  31416418 tagagaaagctcttgaagttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgggttacgcctac 31416517  T
Q  380 cattcccttaccga---ttgtagttaacaatgtcacttgtgactgctctattcctggtgagaacttctgccacgttgtttcaatgtaagtctctttt 473  Q
     |      ||||||   | ||||  |||||||| | |||| |||||||| || ||||||| ||||||||||| ||||||  ||||||||||||||||    
T  31416518 ga------taccgaatgtcgtagagaacaatgtaatttgtaactgctctgttgctggtgacaacttctgccatgttgttgaaatgtaagtctctttt 31416608  T

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Target: chr2; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 208 - 379
Target Start/End: Complemental strand, 31310253 - 31310082
Alignment:
Q  208 tatattttatgaaatgtatgtgtagtttagaagatttttcagtacttggctgataactctcaattgtatatttagagaaagctcttgaagttatagccaa 307  Q
    ||||||| |||| |||| ||||||||||| || ||||||||||||||  |||||| |||| |||| ||||||||| |||||||||||||| |||||| ||    
T  31310253 tatatttgatgacatgtgtgtgtagtttaaaatatttttcagtacttaactgatagctctaaattttatatttagtgaaagctcttgaagatatagctaa 31310154  T
Q  308 atcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactgggttacgcctac 379  Q
    ||||||||| |||| |||||||||||||  |||||||||||||||||||||  |||||||||  ||||||||    
T  31310153 atcacttggtaagacggattggaacttcagcattgatccatgcagcaacaattctaactgggccacgcctac 31310082  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 31295090 - 31294993
Alignment:
Q  272 tgtatatttagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactggg 369  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  31295090 tgtatatgtagagaaagctcttgaagttatagctaaatcacttggtaagaatgattggaacttcgacattgatccatgtagcaaccaacctaactggg 31294993  T

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Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 31416113 - 31416252
Alignment:
Q  21 ttgttaatattaagatgaacacttc---tcaacttctcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttca 117  Q
    |||||||||||||||||||||||||   |||| |||||||||||||||||||| ||||||||||||||||| | ||||||| ||  || | |||| ||||    
T  31416113 ttgttaatattaagatgaacacttcctctcaatttctcttcctttcactcatttccatttggttcatatctcttacagcttttgctgccactactattca 31416212  T
Q  118 ccctgatgaaagtatgatatttatttataccatatctccc 157  Q
    |||||||||||||||||||| ||||| |||| || |||||    
T  31416213 ccctgatgaaagtatgatatatatttctaccttagctccc 31416252  T

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Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 31389108 - 31389007
Alignment:
Q  272 tgtatatttagagaaagctcttgaagttatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgcagcaacaaacctaactgggtt 371  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||| |||| ||    
T  31389108 tgtatatttagagaaagctcttgaagatatagctgaatcacttggtaagaaagattggaacttcgacatcgatccttgcagcaaccaacctatctggttt 31389009  T
Q  372 ac 373  Q
    ||    
T  31389008 ac 31389007  T

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Target: chr2; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 31295363 - 31295241
Alignment:
Q  45 ctcaacttctcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttcaccctgatgaaagtatgatatttattta 144  Q
    ||||| || ||||||||||| |||||  |||||||| ||||||| ||||||||| || ||||| |||| ||||||||||||||||||||||||||||||     
T  31295363 ctcaatttttcttcctttcattcattctcatttggtccatatctctaacagcttttggagctactactattcaccctgatgaaagtatgatatttatttc 31295264  T
Q  145 taccatatctccctaaaaataaa 167  Q
     |||||| ||||| || ||||||    
T  31295263 caccatagctcccaaataataaa 31295241  T

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Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 31389271 - 31389170
Alignment:
Q  42 cttctcaacttctcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttcaccctgatgaaagtatgatatttat 141  Q
    |||||||| |||||||||||||  ||| || ||||||||| |||||| ||||||||| || ||| | |||| |||||||||||||||||||||||| |||    
T  31389271 cttctcaatttctcttcctttcgttcagtgtcatttggtttatatctctaacagcttttggagcaactactattcaccctgatgaaagtatgatatgtat 31389172  T
Q  142 tt 143  Q
    ||    
T  31389171 tt 31389170  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 31310608 - 31310519
Alignment:
Q  54 tcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttcaccctgatgaaagtatgatatttattt 143  Q
    |||| ||||| |||||||||||||||||||||||| |  ||| || |||||||| |||| ||||||| || ||||||||||||| |||||    
T  31310608 tctttctttctctcattgccatttggttcatatctcttccaggttttgaagctactactattcaccccgacgaaagtatgatatctattt 31310519  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 31258192 - 31258069
Alignment:
Q  31 taagatgaacacttc---tcaacttctcttcctttcactcattgccatttggttcatatctttaacagc---ttctgaagctaatactcttcaccctgat 124  Q
    |||||||||||||||   |||| ||||||||||||||||||||   ||||||||||||||| | |||||   |  || |||||||||| ||||||| ||     
T  31258192 taagatgaacacttcatctcaatttctcttcctttcactcattataatttggttcatatctcttacagctattattggagctaatactattcaccccgac 31258093  T
Q  125 gaaagtatgatatttatttatacc 148  Q
    ||||||||||||| ||||| ||||    
T  31258092 gaaagtatgatatctatttctacc 31258069  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 31283965 - 31283896
Alignment:
Q  21 ttgttaatattaagatgaacacttc---tcaacttctcttcctttcactcattgccatttggttcatatc 87  Q
    |||||||||||||||||||||||||   |||| |||||||||||||||||||||  ||||||| ||||||    
T  31283965 ttgttaatattaagatgaacacttcatctcaatttctcttcctttcactcattgttatttggtacatatc 31283896  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 31377019 - 31376936
Alignment:
Q  54 tcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttcaccctgatgaaagtatgatat 137  Q
    |||||||||| ||||||  ||||||||||||||||||||| | || || | |||||||| ||||||| || |||||||||||||    
T  31377019 tcttcctttccctcattctcatttggttcatatctttaactgtttttggatctaatactattcaccccgacgaaagtatgatat 31376936  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 31362918 - 31362837
Alignment:
Q  54 tcttcctttcactcattgccatttggttcatatctttaacagcttctgaagctaatactcttcaccctgatgaaagtatgat 135  Q
    |||||||||||||||||  ||||||||| ||||||  |||| ||| || |||||||||| ||||||| || |||||||||||    
T  31362918 tcttcctttcactcattctcatttggttgatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgat 31362837  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 31388996 - 31388928
Alignment:
Q  402 aacaatgtcacttgtgactgctctattcctggtgagaacttctgccacgttgtttcaatgtaagtctct 470  Q
    ||||||||||| ||  |||||||| || | ||||| ||||||||||| |||||||||||||||||||||    
T  31388996 aacaatgtcacctgcaactgctctgttgccggtgacaacttctgccatgttgtttcaatgtaagtctct 31388928  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 31257764 - 31257685
Alignment:
Q  396 gtagttaacaatgtcacttgtgactgctctattcctggtgagaacttctgccacgttgtttcaatgtaagtctcttttcc 475  Q
    ||||| ||||||||||| ||  |||||  | || ||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  31257764 gtagtgaacaatgtcacctgcaactgcagtgttgctggtgacaacttctgccatgttgtttcaatgtaagtctattttcc 31257685  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 476
Target Start/End: Complemental strand, 31294945 - 31294871
Alignment:
Q  402 aacaatgtcacttgtgactgctctattcctggtgagaacttctgccacgttgtttcaatgtaagtctcttttccg 476  Q
    ||||||||||||||  |||||  |||| ||| ||| ||||||||||| ||||||  ||||||||||| |||||||    
T  31294945 aacaatgtcacttgcaactgcagtatttctgctgacaacttctgccatgttgttgaaatgtaagtctattttccg 31294871  T

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