View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_30 (Length: 487)

Name: NF11538_low_30
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_30
NF11538_low_30
[»] chr1 (11 HSPs)
chr1 (1-465)||(1376112-1376580)
chr1 (1-181)||(1384419-1384600)
chr1 (221-414)||(27278562-27278762)
chr1 (271-414)||(3854678-3854823)
chr1 (1-92)||(2374463-2374554)
chr1 (1-92)||(2381517-2381608)
chr1 (1-72)||(1164621-1164692)
chr1 (17-107)||(1401446-1401533)
chr1 (1-92)||(2838798-2838889)
chr1 (271-366)||(22658094-22658184)
chr1 (1-104)||(1710013-1710115)
[»] chr8 (3 HSPs)
chr8 (271-414)||(24641835-24641980)
chr8 (271-414)||(28554073-28554218)
chr8 (271-414)||(22170678-22170823)
[»] chr6 (7 HSPs)
chr6 (271-414)||(29315039-29315184)
chr6 (271-414)||(27296398-27296543)
chr6 (221-414)||(17685286-17685486)
chr6 (271-414)||(27277906-27278051)
chr6 (271-414)||(27302797-27302942)
chr6 (271-414)||(27382124-27382269)
chr6 (271-414)||(27472507-27472652)
[»] chr4 (5 HSPs)
chr4 (271-414)||(26969657-26969802)
chr4 (221-414)||(19920237-19920437)
chr4 (271-414)||(5713137-5713282)
chr4 (221-414)||(18268258-18268458)
chr4 (271-414)||(10622205-10622350)
[»] chr5 (3 HSPs)
chr5 (271-414)||(24696363-24696508)
chr5 (271-415)||(19708091-19708237)
chr5 (386-452)||(20857753-20857818)
[»] chr3 (7 HSPs)
chr3 (271-414)||(10573463-10573608)
chr3 (221-414)||(15601702-15601902)
chr3 (271-414)||(13247797-13247942)
chr3 (271-414)||(15351856-15352001)
chr3 (277-414)||(18510067-18510206)
chr3 (277-414)||(18521808-18521947)
chr3 (1-92)||(1525342-1525433)
[»] scaffold0705 (1 HSPs)
scaffold0705 (271-414)||(660-805)
[»] scaffold0234 (2 HSPs)
scaffold0234 (271-414)||(3193-3338)
scaffold0234 (271-414)||(12084-12229)
[»] scaffold0063 (1 HSPs)
scaffold0063 (271-414)||(4717-4862)
[»] chr7 (3 HSPs)
chr7 (271-414)||(11536934-11537079)
chr7 (271-414)||(12750015-12750160)
chr7 (277-414)||(15151589-15151728)
[»] scaffold0390 (1 HSPs)
scaffold0390 (271-414)||(7806-7951)
[»] scaffold0433 (1 HSPs)
scaffold0433 (271-414)||(6297-6442)
[»] scaffold0032 (1 HSPs)
scaffold0032 (279-414)||(110978-111115)
[»] scaffold0203 (1 HSPs)
scaffold0203 (271-381)||(24400-24512)
[»] scaffold0229 (1 HSPs)
scaffold0229 (17-107)||(16825-16912)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 1376112 - 1376580
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaacca 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1376112 agagtcaagaatcttcatctgcaactaaaatccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaacca 1376211  T
Q  101 aatattactactgtatactactactaaactgaaacaaaaggaactcatattaataccacacacatgacacaacaatatgcaaaacgtgataaaaggggaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1376212 aatattactactgtatactactactaaattgaaacaaaaggaactcatattaataccacacacatgacacaacaatatgcaaaacgtgataaaaggggaa 1376311  T
Q  201 gtgaagtgacaatgtactagtagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaaca--ctaatcaattttggtaaatattagaa 295  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||   ||||| |||||||||||||||||||    
T  1376312 atgaagtgacaatgtactagtagtcctttaagacatccgtaaatatttttaaaagtattctagtgtctaacattataatcgattttggtaaatattagaa 1376411  T
Q  296 atatttttctaaccatttctcgcatgtggataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatct 395  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1376412 atatttttctaaccatttctcatatgtggataaattgttttggtgactagtatgtcttccacataatccaccaaactaatatcaatgctcccactaatct 1376511  T
Q  396 ccttgtgtgcacaaaatttaaatttgttcttttattaatctaagtttttataaaactctattattgaaat 465  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1376512 ctttgtgtgcacaaaatttaaatttgttcttttattaatctaagtttttat-aaactctattattgaaat 1376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1384419 - 1384600
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatc-acattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaacc 99  Q
    ||||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1384419 agagttaagaaccttcatctgcaactaaaatctctaaccacattgcatagaataacttttcaaagaagtgcattcctacaaactcaattcaaatttaacc 1384518  T
Q  100 aaatattactactgtatactactactaaactgaaacaaaaggaactcatattaataccacacacatgacacaacaatatgca 181  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1384519 aaatattactactgtatactactactaaattgaaacaaaaggaactcatattaataccacacacatgacacaacaatgtgca 1384600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 27278562 - 27278762
Alignment:
Q  221 tagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaacacta--atcaattttggtaaatattagaaatatttttctaaccatttct 315  Q
    |||||||||||||||||| |  ||||| |||||||||||| ||   |||||| ||  |||||||||||||  ||||| ||||| ||| |||||||| |||    
T  27278562 tagtcctttaagacatccatggatattcttaaaagtattccagtgtcgaacattataatcaattttggtacgtattataaataatttcctaaccatgtct 27278661  T
Q  316 cgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatctccttgtgtgcacaaaatt 413  Q
      ||||||  |||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |||    
T  27278662 tacatgtgtagataaattgttttggtgactagtatgccatccacatactccaccaaactaatatcaatgctcccactaatctccttatgtgcacaagatt 27278761  T
Q  414 t 414  Q
    |    
T  27278762 t 27278762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 3854678 - 3854823
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  3854678 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 3854777  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  3854778 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 3854823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2374554 - 2374463
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa 92  Q
    ||||| |||||||||||||||| | |||| |||  |||| ||||||||||||||||||||||  |||||||  |||| ||||||||||||||    
T  2374554 agagttaagaatcttcatctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaa 2374463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2381517 - 2381608
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa 92  Q
    ||||| |||||||||||||||| | |||| |||  |||| ||||||||||||||||||||||  |||||||  |||| ||||||||||||||    
T  2381517 agagttaagaatcttcatctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaa 2381608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1164692 - 1164621
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcat 72  Q
    ||||| |||||||||||||||||||||||   ||||||||| |||||||| || ||||||||| ||||||||    
T  1164692 agagttaagaatcttcatctgcaactaaaactcctatcacactgcatagagtagcttttcaaataagtgcat 1164621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 1401446 - 1401533
Alignment:
Q  17 atctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaaccaaatatta 107  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||| || ||||| |||| |||| |||| |||| ||||||||||||||    
T  1401446 atctgcaactaaattca-tatcacattgcatagaa--acttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaatatta 1401533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2838798 - 2838889
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa 92  Q
    ||||| ||||||||||||||||  ||||| ||   ||||||||||||| |||||||||| ||  |||||||  |||| ||||||||||||||    
T  2838798 agagttaagaatcttcatctgcggctaaaatcgacatcacattgcatacaataacttttaaagtaagtgcagacctaaaaagtcaattcaaa 2838889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 22658094 - 22658184
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtggataaattgttttggtgactagtatatcttccacataatccac 366  Q
    ||||||||||| ||| |||||||||||| |||||||||||| |||| |||| | |     |||||||||||||||||| || |||||||| |||||    
T  22658094 taatcaatttttgtacatattagaaataattttctaaccatgtctcacatgcgta-----tgttttggtgactagtatgtcatccacatactccac 22658184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1710115 - 1710013
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaacca 100  Q
    ||||| ||||||||  ||||||||||||| ||| ||||| ||||||||||| || ||||| || |||||||  |||  ||| | || |||||||||||||    
T  1710115 agagttaagaatctaaatctgcaactaaaatccttatcaaattgcatagaacaatttttc-aataagtgcaaacctgaaaattaaactcaaatttaacca 1710017  T
Q  101 aata 104  Q
    ||||    
T  1710016 aata 1710013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 24641980 - 24641835
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| ||||||  ||||||||||||||||||||||||| || | |||||| |||||||    
T  24641980 taatcaattttggtacatattagaaataattttccaaccatgtctcacatgtgcagataaattgttttggtgactagtatgtcattcacatactccacca 24641881  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||    
T  24641880 aactaatatcaatgctcccactaatctccttatgtgcacaagattt 24641835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 28554218 - 28554073
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtgga--taaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  |||||| |  |||||| ||| |||||||||||| || |||||||| |||||||    
T  28554218 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtaaataaattatttaggtgactagtatgtcatccacatactccacca 28554119  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  28554118 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 28554073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 22170823 - 22170678
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||| ||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || |||||  ||||||    
T  22170823 taatcaattatggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatacgccacca 22170724  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  22170723 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 22170678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 29315184 - 29315039
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  29315184 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 29315085  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  29315084 aactaatttcaatgctcccactaatctccttgtgtgcacaagattt 29315039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 27296543 - 27296398
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  27296543 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 27296444  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||| ||||||| ||||||||| ||||    
T  27296443 aactaatttcaatgctcccactagtctccttatgtgcacaagattt 27296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 17685286 - 17685486
Alignment:
Q  221 tagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaacactaa--tcaattttggtaaatattagaaatatttttctaaccatttct 315  Q
    ||||||||||||||||||    ||||| || || |||||||||   ||||||||||  |||||||||||| |||||  ||||| |||||||||||| |||    
T  17685286 tagtcctttaagacatccaaggatattcttgaaggtattctagtgtcgaacactaaaatcaattttggtacatattgaaaataattttctaaccatgtct 17685385  T
Q  316 cgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatctccttgtgtgcacaaaatt 413  Q
      ||||||  |||||||| |||||||||||||||| || |||||||| |||||||||| ||| |||||| |||||||||||||||| || |||||| |||    
T  17685386 tacatgtgtagataaattattttggtgactagtatgtcatccacatactccaccaaaccaatttcaatgctcccactaatctccttatgcgcacaagatt 17685485  T
Q  414 t 414  Q
    |    
T  17685486 t 17685486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 27278051 - 27277906
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  27278051 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 27277952  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||| ||||||| | ||||||| ||||    
T  27277951 aactaatttcaatgctcccactagtctccttatatgcacaagattt 27277906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 27302942 - 27302797
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  27302942 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 27302843  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||| ||||||| | ||||||| ||||    
T  27302842 aactaatttcaatgctcccactagtctccttatatgcacaagattt 27302797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 27382124 - 27382269
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  27382124 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 27382223  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    || |||| |||||| |||||||||||||||| ||||||||| ||||    
T  27382224 aaataatttcaatgctcccactaatctccttatgtgcacaagattt 27382269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 27472507 - 27472652
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  27472507 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 27472606  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    || |||| |||||| |||||||||||||||| ||||||||| ||||    
T  27472607 aaataatttcaatgctcccactaatctccttatgtgcacaagattt 27472652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 26969802 - 26969657
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| ||||| |||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  26969802 taatcaattttggtacatattggaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 26969703  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  26969702 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 26969657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 19920237 - 19920437
Alignment:
Q  221 tagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaacac--taatcaattttggtaaatattagaaatatttttctaaccatttct 315  Q
    ||||||||||||||||||    ||||| || || |||||||||   |||||||  ||||||||||||||| |||||  ||||| |||||||||||| |||    
T  19920237 tagtcctttaagacatccaaggatattcttgaaggtattctagtgtcgaacacaataatcaattttggtacatattgaaaataattttctaaccatgtct 19920336  T
Q  316 cgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatctccttgtgtgcacaaaatt 413  Q
      ||||||  |||||||| |||||||||||||||| || |||||||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||    
T  19920337 tacatgtgtagataaattattttggtgactagtatgtcatccacatactccaccaaactaatttcaatgctcccactaatctccttatgtgcacaagatt 19920436  T
Q  414 t 414  Q
    |    
T  19920437 t 19920437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 5713282 - 5713137
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  5713282 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 5713183  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  5713182 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 5713137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 221 - 414
Target Start/End: Complemental strand, 18268458 - 18268258
Alignment:
Q  221 tagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaacactaa--tcaattttggtaaatattagaaatatttttctaaccatttct 315  Q
    ||||||||||||||||||    ||||| || || |||||||||   ||||||||||  |||||||||||| |||||  ||||| |||||||||||| |||    
T  18268458 tagtcctttaagacatccaaggatattcttgaaggtattctagtgtcgaacactaaaatcaattttggtacatattgaaaataattttctaaccatgtct 18268359  T
Q  316 cgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatctccttgtgtgcacaaaatt 413  Q
      ||||||  |||||||| |||||||||||||||| || |||||||| |||||||||| ||| |||||| |||||||||||||||| || |||||| |||    
T  18268358 tacatgtgtagataaattattttggtgactagtatgtcatccacatactccaccaaaccaatttcaatgctcccactaatctccttatgcgcacaagatt 18268259  T
Q  414 t 414  Q
    |    
T  18268258 t 18268258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 10622205 - 10622350
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    |||||||||||||||  ||||  ||||| |||| ||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  10622205 taatcaattttggtacgtattgaaaataattttgtaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 10622304  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| || ||||||||||||| ||||||||| ||||    
T  10622305 aactaatttcaatgctctcactaatctccttatgtgcacaagattt 10622350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 24696363 - 24696508
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  24696363 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 24696462  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  24696463 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 24696508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 271 - 415
Target Start/End: Original strand, 19708091 - 19708237
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    |||||||||||| || |||||  ||||| |||||||||||| |||  ||||||  |||||||| || ||||||||| ||| || |||||||| |||||||    
T  19708091 taatcaattttgttacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattgtggtgactattatgtcatccacatactccacca 19708190  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattta 415  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||    
T  19708191 aactaatttcaatgctcccactaatctccttatgtgcacaagattta 19708237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 20857818 - 20857753
Alignment:
Q  386 ccactaatctccttgtgtgcacaaaatttaaatttgttcttttattaatctaagtttttataaaact 452  Q
    ||||||| |||||| | ||||||| ||||| |||||| ||||||||||| |||||||| ||||||||    
T  20857818 ccactaacctccttctatgcacaagatttacatttgt-cttttattaatttaagttttcataaaact 20857753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 10573463 - 10573608
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| ||| |||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  10573463 taatcaattttggtacatattgaaaataattttctaaccatgtcttgcatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 10573562  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  10573563 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 10573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 15601702 - 15601902
Alignment:
Q  221 tagtcctttaagacatccgtaaatatttttaaaagtattctag---cgaacac--taatcaattttggtaaatattagaaatatttttctaaccatttct 315  Q
    |||||||||||||||||| |  ||||| || || ||||| |||   |||||||  ||||||||||||||| |||||  ||||| |||||||||||| |||    
T  15601702 tagtcctttaagacatccatggatattcttgaaggtattatagtgtcgaacactataatcaattttggtacatattgaaaataattttctaaccatgtct 15601801  T
Q  316 cgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaatatcaatgttcccactaatctccttgtgtgcacaaaatt 413  Q
      ||||||  |||||||| |||||||||||||||| || || ||||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||    
T  15601802 tacatgtgtagataaattattttggtgactagtatgtcatctacatactccaccaaactaatttcaatgctcccactaatctccttatgtgcacaagatt 15601901  T
Q  414 t 414  Q
    |    
T  15601902 t 15601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 13247942 - 13247797
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||| ||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  13247942 taatcaattttggtacatattgaaaataattttctaagcatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 13247843  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  13247842 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 13247797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 15351856 - 15352001
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  15351856 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 15351955  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  15351956 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 15352001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 18510206 - 18510067
Alignment:
Q  277 attttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaa 374  Q
    ||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||||||||    
T  18510206 attttggtagatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccaccaaactaa 18510107  T
Q  375 tatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    | |||||| |||||||||||||||| ||||||||| ||||    
T  18510106 tttcaatgctcccactaatctccttatgtgcacaagattt 18510067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 18521947 - 18521808
Alignment:
Q  277 attttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaa 374  Q
    ||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||||||||    
T  18521947 attttggtagatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccaccaaactaa 18521848  T
Q  375 tatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    | |||||| |||||||||||||||| ||||||||| ||||    
T  18521847 tttcaatgctcccactaatctccttatgtgcacaagattt 18521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1525342 - 1525433
Alignment:
Q  1 agagtcaagaatcttcatctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa 92  Q
    ||||| |||||||||||||||  |||||| |||  |||||||||||||||||||||||||||  |||||||  |||| ||||||||||||||    
T  1525342 agagttaagaatcttcatctgtgactaaaatccacatcacattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaa 1525433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 660 - 805
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  660 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 759  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  760 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 3193 - 3338
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  3193 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 3292  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  3293 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 3338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 12084 - 12229
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  12084 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 12183  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  12184 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 12229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 4862 - 4717
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  4862 taatcaattttggtacatatttaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 4763  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  4762 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 4717  T

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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 11536934 - 11537079
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  11536934 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 11537033  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  11537034 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 11537079  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 12750160 - 12750015
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  12750160 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 12750061  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| |||| |||| ||||    
T  12750060 aactaatttcaatgctcccactaatctccttatgtgaacaagattt 12750015  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 15151728 - 15151589
Alignment:
Q  277 attttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaa 374  Q
    ||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||||||||    
T  15151728 attttggtagatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccaccaaactaa 15151629  T
Q  375 tatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    | | |||| |||||||||||||||| ||||||||| ||||    
T  15151628 tttaaatgctcccactaatctccttatgtgcacaagattt 15151589  T

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Target: scaffold0390 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 7806 - 7951
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| || ||||    
T  7806 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactctacca 7905  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  7906 aactaatttcaatgctcccactaatctccttatgtgcacaagattt 7951  T

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Target: scaffold0433 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 6442 - 6297
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| ||||   ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || || ||||| |||||||    
T  6442 taatcaattttggtacatatcgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatctacatactccacca 6343  T
Q  369 aactaatatcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    ||||||| |||||| |||||||||||||||| | ||||||| ||||    
T  6342 aactaatttcaatgctcccactaatctccttatttgcacaagattt 6297  T

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Target: scaffold0032 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 414
Target Start/End: Original strand, 110978 - 111115
Alignment:
Q  279 tttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccaccaaactaata 376  Q
    ||||||| |||||||||||  |||||||||||| |||  ||||||  || |||||||||| || ||||| || || || ||||| |||||||||||||||    
T  110978 tttggtacatattagaaatcattttctaaccatgtcttacatgtgtagacaaattgttttagtaactagcatgtcatctacatactccaccaaactaata 111077  T
Q  377 tcaatgttcccactaatctccttgtgtgcacaaaattt 414  Q
    |||||| ||||| |||||||||||||||||||| ||||    
T  111078 tcaatgctcccaataatctccttgtgtgcacaagattt 111115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 381
Target Start/End: Original strand, 24400 - 24512
Alignment:
Q  271 taatcaattttggtaaatattagaaatatttttctaaccatttctcgcatgtg--gataaattgttttggtgactagtatatcttccacataatccacca 368  Q
    ||||||||||||||| |||||  ||||| |||||||||||| |||  ||||||  |||||||| |||||||||||||||| || |||||||| |||||||    
T  24400 taatcaattttggtacatattgaaaataattttctaaccatgtcttacatgtgtagataaattattttggtgactagtatgtcatccacatactccacca 24499  T
Q  369 aactaatatcaat 381  Q
    ||||||| |||||    
T  24500 aactaatttcaat 24512  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 16912 - 16825
Alignment:
Q  17 atctgcaactaaattccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaaccaaatatta 107  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||| || ||||| |||| |||| |||| |||| ||||||||||||||    
T  16912 atctgcaactaaattca-tatcacattgcatagaa--acttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaatatta 16825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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