View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_31 (Length: 485)
Name: NF11538_low_31
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 2021575 - 2021138
Alignment:
| Q |
14 |
agaattattcaaaatagggagattaccaacaaacggtttcagagaaacctcatctacacacatacaaaaatgatattttttcacagcaacttagcttgtt |
113 |
Q |
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| T |
2021575 |
agaattattcaaaatagggagattaccaacaaacggtttcagagaaacctcatctacacacatacaaaaatgatattttttcacagcaacttagcttgtt |
2021476 |
T |
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| Q |
114 |
cctactgtggttgtagaatggcctgacttaatagttaattgtaaaaataattcatgttgtggatcgcgtaagtaactcgattggtgaggtaaacaatacc |
213 |
Q |
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| T |
2021475 |
cccactgtggttgtagaatggcctgacttaatagttaagtgtaaaaataattcatgtcgtggatcgcgtaagtaactcgattggtgaggtaaacaatacc |
2021376 |
T |
|
| Q |
214 |
gaagcaattttaagcattaggtttagaatttgaaccttggaaactgacataaccaaactgaagctgtggatggtgaccattgttggatcattaaaaagaa |
313 |
Q |
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| T |
2021375 |
gaagcagttttaagcattaggtttagaatttgaaccttggaaactgacataaccaaactgaagttgtggatggtgaccattgttggatcatgaaaaagaa |
2021276 |
T |
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| Q |
314 |
acaaaatggtaatatacatttaagagttgaataaaaaacatcatgaagagacttccccaaggtaaacaacttccccaaggtaaacaacttcagcttgtgc |
413 |
Q |
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| T |
2021275 |
acaaaatggcaatatacatttaagagttgaataaaaaacatcatgaagagacttccccaaggtaaacaa------------------cttcagcttgtgc |
2021194 |
T |
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| Q |
414 |
ggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaat |
469 |
Q |
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| T |
2021193 |
ggaggctctcttgaatcgcagcagttctgacatcaacttagatccgacgttcaaat |
2021138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 2008088 - 2007999
Alignment:
| Q |
382 |
acttccccaaggtaaacaacttcagcttgtgcggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaattg |
471 |
Q |
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| T |
2008088 |
acttccccaaggtaaacaacttcagcttgtgctgaggctctcttgaatcgcaacaattctgacatcaacttcgatccaacgttaaaattg |
2007999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 1794341 - 1794289
Alignment:
| Q |
317 |
aaatggtaatatacatttaagagttgaataaaaaacatcatgaagagacttcc |
369 |
Q |
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| T |
1794341 |
aaatggtaatatgcatttaagagttgaataaaaaacattatgacgagacttcc |
1794289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 2008186 - 2008096
Alignment:
| Q |
268 |
aaactgaagctgtgga-tggtgaccattgttggatcattaaaaagaaacaaaatggta---atatacatttaagagttgaataaaaaacatca |
356 |
Q |
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| T |
2008186 |
aaactgaagatgtggaatggtgaccattgttggtacattaaagaga--caaaatggtagtaatatacatttaagagttgaataaaaaatatca |
2008096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 2013158 - 2013116
Alignment:
| Q |
345 |
taaaaaacatcatgaagagacttcc-ccaaggtaaacaacttc |
386 |
Q |
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| T |
2013158 |
taaaaaacatcatgaagaaacttccgccaaggtaaacaacttc |
2013116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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