View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_32 (Length: 480)
Name: NF11538_low_32
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 38169674 - 38170127
Alignment:
| Q |
19 |
ccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
118 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169674 |
ccttcctcatcatgttccatcctcaacccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
38169773 |
T |
|
| Q |
119 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169774 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
38169873 |
T |
|
| Q |
219 |
ttttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaa---cttcttctttttgttgttgtaattttttatct |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38169874 |
ttttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttttatct |
38169973 |
T |
|
| Q |
316 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169974 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
38170073 |
T |
|
| Q |
416 |
aaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttg |
469 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38170074 |
aaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttg |
38170127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 38179488 - 38179932
Alignment:
| Q |
19 |
ccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179488 |
ccttcctcatcacattccatcctcaccccagtcttccacacatcttcaattaactttgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
38179587 |
T |
|
| Q |
119 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179588 |
gaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgactacacca |
38179687 |
T |
|
| Q |
219 |
ttttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttttatct |
315 |
Q |
| |
|
||| | |||||||||||| | ||| ||||||| |||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| |||| |
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|
| T |
38179688 |
tttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatct |
38179787 |
T |
|
| Q |
316 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
415 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
38179788 |
ctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacat |
38179887 |
T |
|
| Q |
416 |
aaacaacagacttttcatcctttgaatccaaccattgaatgtaat |
460 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
38179888 |
aaaccacagacgattcatcctttgaatccaaccattcaaagtaat |
38179932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 38184158 - 38184601
Alignment:
| Q |
20 |
cttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatagg |
119 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| |
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|
| T |
38184158 |
cttcctcatcacgttccaccctcaacccagtcttccacaaatcttcaattaactttgcattagtagtttgatctgtccactggggaaatgctaccatagg |
38184257 |
T |
|
| Q |
120 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38184258 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
38184357 |
T |
|
| Q |
220 |
tttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttttatctc |
316 |
Q |
| |
|
|| | |||||||||||| | ||| |||||||||||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| ||||| |
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|
| T |
38184358 |
ttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctc |
38184457 |
T |
|
| Q |
317 |
taataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacata |
416 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
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|
| T |
38184458 |
taattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacata |
38184557 |
T |
|
| Q |
417 |
aacaacagacttttcatcctttgaatccaaccattgaatgtaat |
460 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
38184558 |
aaccacagacgattcatcctttgaatccaaccattcaaagtaat |
38184601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 35060987 - 35060845
Alignment:
| Q |
40 |
ctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaacttt |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||| ||||||| ||||| ||||||||||| || | |||||||| || ||||||||| |
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|
| T |
35060987 |
ctcacccctatcttccacacatcttcaattagttttgcattagtcttttgatcagtccattgaggaaatgccactagtggaaccccagataccaaacttt |
35060888 |
T |
|
| Q |
140 |
ccaaagtcgaattccatccacaatgcgtcataaaacaacccaa |
182 |
Q |
| |
|
|||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
35060887 |
ccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaa |
35060845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 35054239 - 35054107
Alignment:
| Q |
50 |
tcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcga |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||| || ||||| || ||||||||||||||| |||| ||||||||||| || |
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|
| T |
35054239 |
tcttccacacatcttcaattaactttgcattagtcatctgatctgtccattgtggaaacgccaccataggaaccccttttaccaagctttccaaagttga |
35054140 |
T |
|
| Q |
150 |
attccatccacaatgcgtcataaaacaacccaa |
182 |
Q |
| |
|
|||||| ||||| || |||| |||||||||||| |
|
|
| T |
35054139 |
attccaaccacagtgtgtcaaaaaacaacccaa |
35054107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 35053994 - 35053885
Alignment:
| Q |
316 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
415 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||||||||| ||| |||||||||||||| ||||||| | |||||||||| | ||||||||||||||| |
|
|
| T |
35053994 |
ctaagaacccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacat |
35053895 |
T |
|
| Q |
416 |
aaacaacaga |
425 |
Q |
| |
|
|||| ||||| |
|
|
| T |
35053894 |
aaaccacaga |
35053885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 35060750 - 35060641
Alignment:
| Q |
313 |
tctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaa |
412 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| ||| |||||| |||| |||||||||||| |||||| | |||||||||| | ||||||| |||| |
|
|
| T |
35060750 |
tctctcatgacccacaagaatgaaaacccacaattcaacaacgcacttgcaatttcctctgtttgtcgctcagacaaaacaaagtaactaccaaaagaaa |
35060651 |
T |
|
| Q |
413 |
cataaacaac |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
35060650 |
cataaacaac |
35060641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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