View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_33 (Length: 473)

Name: NF11538_low_33
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_33
NF11538_low_33
[»] chr7 (2 HSPs)
chr7 (150-462)||(18482723-18483035)
chr7 (217-455)||(38848387-38848637)
[»] chr8 (2 HSPs)
chr8 (150-462)||(21030696-21031009)
chr8 (100-152)||(28605842-28605894)
[»] chr5 (17 HSPs)
chr5 (150-462)||(42134732-42135044)
chr5 (85-152)||(10652125-10652192)
chr5 (85-152)||(10740622-10740689)
chr5 (100-152)||(10763071-10763123)
chr5 (85-152)||(7193224-7193291)
chr5 (94-152)||(10716872-10716930)
chr5 (94-152)||(10746947-10747005)
chr5 (85-152)||(10588353-10588420)
chr5 (85-152)||(10660008-10660075)
chr5 (94-152)||(10565246-10565304)
chr5 (94-152)||(10604971-10605029)
chr5 (85-152)||(10611929-10611996)
chr5 (94-152)||(10216681-10216739)
chr5 (94-152)||(10559121-10559179)
chr5 (99-152)||(11048594-11048647)
chr5 (85-152)||(19605788-19605855)
chr5 (94-152)||(9836260-9836318)
[»] chr6 (6 HSPs)
chr6 (150-462)||(28520802-28521115)
chr6 (75-152)||(12899789-12899866)
chr6 (79-153)||(12932497-12932571)
chr6 (79-153)||(12948862-12948936)
chr6 (79-153)||(12907408-12907482)
chr6 (79-152)||(12958297-12958370)
[»] chr1 (4 HSPs)
chr1 (150-377)||(14505741-14505968)
chr1 (18-153)||(39875748-39875883)
chr1 (18-153)||(39890825-39890960)
chr1 (18-153)||(39883871-39884006)
[»] chr3 (1 HSPs)
chr3 (148-458)||(17481713-17482023)
[»] chr2 (1 HSPs)
chr2 (79-153)||(17923320-17923394)
[»] scaffold0692 (1 HSPs)
scaffold0692 (79-152)||(7512-7585)
[»] chr4 (1 HSPs)
chr4 (371-418)||(18835042-18835089)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 150 - 462
Target Start/End: Complemental strand, 18483035 - 18482723
Alignment:
Q  150 tggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 249  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18483035 tggtaaaggatattatagcaatcagaaaaattcatctagacactgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 18482936  T
Q  250 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatg 349  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||||||    
T  18482935 tttcccaatgctaacataccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatctggaaatgtcagtaacactgagcatg 18482836  T
Q  350 ggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctccttc 449  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  18482835 ggaatggtgactcaggttttagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaactctgttatcctcagctgtgtctccttc 18482736  T
Q  450 tgtttctacttca 462  Q
    |||||||||||||    
T  18482735 tgtttctacttca 18482723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 217 - 455
Target Start/End: Complemental strand, 38848637 - 38848387
Alignment:
Q  217 cacaccattgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacag 316  Q
    ||||||||||| || ||||| |||||||||||||||||  || |||||| | ||| |||||||| | |    ||||| ||||| | |||||||  |||||    
T  38848637 cacaccattgacacttgttatctgaagcatggatttcctcatcctaacaaatcagcaaattccaatacacttactcatggatctactaatagtgttacag 38848538  T
Q  317 ttgaatctggaaatgttagtaacactgagcatgggaatggtgactcaggt------------ttcagtatttctcaagacagatatgagcaccttgtgaa 404  Q
    ||||||||||||||   ||||||||| |||| ||||||||||| ||| ||            |||||||||||||||||||||||||||||||||||||     
T  38848537 ttgaatctggaaatacaagtaacactcagcaggggaatggtgattcaagtggtgattcaagtttcagtatttctcaagacagatatgagcaccttgtgag 38848438  T
Q  405 cttgcttcaacaagcaactttgttatcctcagatgtgtctccttctgtttc 455  Q
     |||||||||||||||||||||||  |  ||| ||||||||||||||||||    
T  38848437 tttgcttcaacaagcaactttgttgcctacagctgtgtctccttctgtttc 38848387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 150 - 462
Target Start/End: Complemental strand, 21031009 - 21030696
Alignment:
Q  150 tggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 249  Q
    ||||||||||||||||| |||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21031009 tggtaaaggatattatagcaatctaaaaaattcatctagacactgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 21030910  T
Q  250 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  21030909 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatctggaaatgttagtaacactgagcatg 21030810  T
Q  350 ggaat-ggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctcctt 448  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  21030809 ggaataggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaactctgttatcctcagctgtgtctcctt 21030710  T
Q  449 ctgtttctacttca 462  Q
    ||||||||||||||    
T  21030709 ctgtttctacttca 21030696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 28605894 - 28605842
Alignment:
Q  100 ccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||||||||||||||||||||||||||| | || |||||| | |||||||||    
T  28605894 ccaaaatcactcacatgagcaaccatgtcattatgaagaagaatattgcttgg 28605842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 150 - 462
Target Start/End: Original strand, 42134732 - 42135044
Alignment:
Q  150 tggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 249  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42134732 tggtaaaggatattatagcaatcagaaaaattcatctagacactgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 42134831  T
Q  250 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||| || |||||||||||||    
T  42134832 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatctggaaatgtcagcaacactgagcatg 42134931  T
Q  350 ggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctccttc 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  42134932 ggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaactctgtcatcctcagctgtgtctccttc 42135031  T
Q  450 tgtttctacttca 462  Q
    | |||||||||||    
T  42135032 tatttctacttca 42135044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 10652125 - 10652192
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10652125 acaagtcttgctatgccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattacttgg 10652192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 10740622 - 10740689
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10740622 acaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 10740689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 10763071 - 10763123
Alignment:
Q  100 ccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10763071 ccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 10763123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 7193291 - 7193224
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  7193291 acaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttgg 7193224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 10716872 - 10716930
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10716872 gctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 10716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 10746947 - 10747005
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10746947 gctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 10747005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 10588353 - 10588420
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  10588353 acaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttgg 10588420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 10660008 - 10660075
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  10660008 acaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattacttgg 10660075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 10565304 - 10565246
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  10565304 gctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggatattgcttgg 10565246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 10605029 - 10604971
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  10605029 gctatgccaaaatcactcacatgagcaaccatatcatcatcaagtaggacattgcttgg 10604971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 10611996 - 10611929
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||| |||||||| || |||||||| ||||||||||||||    
T  10611996 acaagtcttgctatgccaaaatcactcacatgtgcaaccatatcatcatcaagtaggacattgcttgg 10611929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 10216681 - 10216739
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| |||||||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  10216681 gctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttgg 10216739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 10559179 - 10559121
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| |||||||||||||||    
T  10559179 gctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttgg 10559121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 11048594 - 11048647
Alignment:
Q  99 gccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||| |||||    
T  11048594 gccaaaatcactcacatgagcaaccatgtcgtcgttaagaagaacattacttgg 11048647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 19605788 - 19605855
Alignment:
Q  85 acaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||| |||| |||||||||||||||||| ||||| || ||||| |||| |||||||||||||||    
T  19605788 acaagtcttgctatgccaaaatcactcacatgtgcaacgatatcgtcgtcaataaggacattgcttgg 19605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 9836260 - 9836318
Alignment:
Q  94 gctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    |||| ||||||||||||||| |||||||||||||  ||||| |||||||  ||||||||    
T  9836260 gctatgccaaaatcactcacgtgagcaaccatgttatcatcgagaaggatgttgcttgg 9836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 150 - 462
Target Start/End: Complemental strand, 28521115 - 28520802
Alignment:
Q  150 tggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 249  Q
    ||||||||||||||||  |||||| |||||||||||| |||| ||||| |||||||| ||||| || ||||| |||||||| ||||||||||||||||||    
T  28521115 tggtaaaggatattatggcaatcaaaaaaattcatcttgacactgtactttttgtaagcgcacaaatcacactattgatacttgttacctgaagcatgga 28521016  T
Q  250 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28521015 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagctgaatctggaaatgttagtaacactgagcatg 28520916  T
Q  350 ggaat-ggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctcctt 448  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  28520915 ggaataggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaaccctgttatcctcagctgtgtctcctt 28520816  T
Q  449 ctgtttctacttca 462  Q
    ||||||||||||||    
T  28520815 ctgtttctacttca 28520802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 12899866 - 12899789
Alignment:
Q  75 aattgttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12899866 aattgttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 12899789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 12932571 - 12932497
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12932571 gttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggt 12932497  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 12948936 - 12948862
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12948936 gttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggt 12948862  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 12907482 - 12907408
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||| |||| ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  12907482 gttgagacaagtcttgctatgccaaaatcactcaaatgagcaaccatgtcatcatcaagaaggacattgcttggt 12907408  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 12958370 - 12958297
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||| |||| ||| ||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  12958370 gttgagacaagtcttgctattccaaaatcactcacatgagcaaccatgtcaccatcaagaaggacattgcttgg 12958297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 150 - 377
Target Start/End: Complemental strand, 14505968 - 14505741
Alignment:
Q  150 tggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatgga 249  Q
    ||||||||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  14505968 tggtaaaggatattatggcaatcataaaaattcatctagacactgtaccttttgtaaccgcactaatcacaccattgatacttgttacctgaagcatgga 14505869  T
Q  250 tttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatg 349  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  14505868 tttcccaatgctaacggaccaggaaattccactgcctccactcaaggatccactaattgtgttacagttgaatctggaaatgttagtaacactgagcatg 14505769  T
Q  350 ggaatggtgactcaggtttcagtatttc 377  Q
    |||||||||| |||||||||||||||||    
T  14505768 ggaatggtgaatcaggtttcagtatttc 14505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 39875748 - 39875883
Alignment:
Q  18 ataacctatagtcccctttattcccattgagctggtttgtttattggagttcccatcaattgttgaaacaattctcgctaagccaaaatcactcacatga 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39875748 ataacctatagtcccctttattcccattgagctggtttgattattggatttgccatcaattgttgaaacaagtctggctaagccaaaatcactcacatga 39875847  T
Q  118 gcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||||||||| || |||||||||||||||||||||    
T  39875848 gcaaccatgtcatcgtcaagaaggacattgcttggt 39875883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 39890825 - 39890960
Alignment:
Q  18 ataacctatagtcccctttattcccattgagctggtttgtttattggagttcccatcaattgttgaaacaattctcgctaagccaaaatcactcacatga 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39890825 ataacctatagtcccctttattcccattgagctggtttgattattggatttgccatcaattgttgaaacaagtctggctaagccaaaatcactcacatga 39890924  T
Q  118 gcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||||||||| || |||||||||||||||||||||    
T  39890925 gcaaccatgtcatcttcaagaaggacattgcttggt 39890960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 39883871 - 39884006
Alignment:
Q  18 ataacctatagtcccctttattcccattgagctggtttgtttattggagttcccatcaattgttgaaacaattctcgctaagccaaaatcactcacatga 117  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39883871 ataacctatagtcccctttattcccattgagctggtttgaatattggatttgccatcaattgttgaaacaagtctggctaagccaaaatcactcacatga 39883970  T
Q  118 gcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||||||||| || |||||||||||||||||||||    
T  39883971 gcaaccatgtcatcgtcaagaaggacattgcttggt 39884006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 458
Target Start/End: Complemental strand, 17482023 - 17481713
Alignment:
Q  148 cttggtaaaggatattataacaatcagaaaaattcatctagacattgtaccttttgtaaccgcaccaaccacaccattgatacctgttacctgaagcatg 247  Q
    ||||||| ||||||||||   |||||||| |||||||| | | |||| |  || || || || || |||||||  ||||| || ||||| | ||||||||    
T  17482023 cttggtataggatattatggaaatcagaagaattcatccaaatattgaaatttctgcaatcgtacaaaccacattattgacacttgttatcagaagcatg 17481924  T
Q  248 gatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagca 347  Q
    || | || ||  |||||| | || ||||||||| ||| | |||||| | ||||| |||||||  |||||| |||| ||| ||||   |||||||||||||    
T  17481923 gactccctaactctaacaaatcatgaaattccaatgctttcactcatgaatccactaatagtgttacagtcgaatttggtaatggaggtaacactgagca 17481824  T
Q  348 tgggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctcct 447  Q
    | |||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||| ||| || ||| |||||   |||||||||    
T  17481823 ttggaatggtgaatcaggtttcagtatttctcaggacacatatcagcaccttgtgaacttggttcaacaagaaacctttttaccctcaacagtgtctcct 17481724  T
Q  448 tctgtttctac 458  Q
    |||||||||||    
T  17481723 tctgtttctac 17481713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 17923320 - 17923394
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttggt 153  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17923320 gttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggt 17923394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 7585 - 7512
Alignment:
Q  79 gttgaaacaattctcgctaagccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattgcttgg 152  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7585 gttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttgg 7512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 18835089 - 18835042
Alignment:
Q  371 gtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaag 418  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||    
T  18835089 gtatttctcaagacagatatgagcaccttgtttccttgcttcaacaag 18835042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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