View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_37 (Length: 460)

Name: NF11538_low_37
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_37
NF11538_low_37
[»] chr4 (6 HSPs)
chr4 (35-450)||(32708855-32709270)
chr4 (309-353)||(41238843-41238887)
chr4 (286-418)||(41200190-41200322)
chr4 (286-359)||(53380934-53381007)
chr4 (384-420)||(13571491-13571527)
chr4 (323-367)||(48985507-48985551)
[»] chr1 (3 HSPs)
chr1 (324-418)||(39526110-39526205)
chr1 (286-419)||(50414527-50414660)
chr1 (286-402)||(51316368-51316483)
[»] chr7 (3 HSPs)
chr7 (324-419)||(25296829-25296925)
chr7 (324-418)||(24978715-24978810)
chr7 (384-420)||(9705224-9705260)
[»] chr6 (2 HSPs)
chr6 (330-418)||(24667008-24667096)
chr6 (295-418)||(9082315-9082437)
[»] chr5 (3 HSPs)
chr5 (324-418)||(5860883-5860976)
chr5 (329-407)||(16263110-16263188)
chr5 (326-415)||(28094136-28094225)
[»] chr2 (3 HSPs)
chr2 (322-368)||(14377701-14377747)
chr2 (324-409)||(15282037-15282121)
chr2 (322-405)||(12023783-12023867)
[»] chr3 (4 HSPs)
chr3 (325-420)||(6992041-6992136)
chr3 (365-416)||(28562141-28562192)
chr3 (334-410)||(24182268-24182345)
chr3 (366-419)||(27801180-27801233)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 35 - 450
Target Start/End: Complemental strand, 32709270 - 32708855
Alignment:
Q  35 ctcatgaaagcatctagcttgtgatgttcttcagattttttaagttgtttcaggattttagagtttacactgcatgaggatttgtaaatttcctacttgt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32709270 ctcatgaaagcatctagcttgtgatgttcttcagattttttaagctgtttcaggattttagtgtttacactgcatgaggatttgtaaatttcctacttgt 32709171  T
Q  135 tttattactcggaagatttggctnnnnnnntttagtattcaaagaagtgttcctatttttgtatgcatattatgtttgtatgttctcttatgagggattg 234  Q
    ||||||||| |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709170 tttattacttggaagatttggctaaaaaaatttagtattcaaagaagtgttcctatttttgtatgcatattatgtttgtatgttctcttatgagggattg 32709071  T
Q  235 agtttttagaacgggtgaacttgcttaatcatctcaagcgaaaggaaccttgtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgt 334  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  32709070 agtttttagaacggatgaacttgcttactcatctcaagcgaaaggaaccttgtaatccgaagtttggtcaggatgtaaggaaagtcagaccaagaattgt 32708971  T
Q  335 tccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtttcttcattagttttta 434  Q
    ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32708970 tccactcagatattgaacttaggttcttccgaacaattagtcgttagtggagctcattaaccacttgagcctaattgcttggtttcttcattagttttta 32708871  T
Q  435 ttttgctagccctttg 450  Q
    ||||||||||| ||||    
T  32708870 ttttgctagccttttg 32708855  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 41238843 - 41238887
Alignment:
Q  309 gtaagtaaagttagaccaagaattgttccacccagaaattgaact 353  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  41238843 gtaagtaaagtcaggccaagaattgttccacccagaaattgaact 41238887  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 41200322 - 41200190
Alignment:
Q  286 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tgg 384  Q
    |||||||| ||||||| |  || ||||||| |||| | |||||||||||||||||||  | | ||||| ||||||| ||||  | || ||| || | |||    
T  41200322 gtaatccggagtttggccttgaggtaagtatagtttggccaagaattgttccacccaagattcgaactcaggttctcccgatga-ttcgtcctttggtgg 41200224  T
Q  385 agctcattaaccacttgagcctaattgcttggtt 418  Q
    ||||||||||| |||||||| |||||||||||||    
T  41200223 agctcattaacaacttgagcttaattgcttggtt 41200190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 53381007 - 53380934
Alignment:
Q  286 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggtt 359  Q
    |||||||| ||||||| | ||| ||||||||||   | ||||||||||||||||| || ||| |||||||||||    
T  53381007 gtaatccgtagtttggccgggaggtaagtaaagcctggccaagaattgttccacctaggaatcgaacttaggtt 53380934  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 13571527 - 13571491
Alignment:
Q  384 gagctcattaaccacttgagcctaattgcttggtttc 420  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  13571527 gagctcgttaaccacttgagcctaatcgcttggtttc 13571491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 48985507 - 48985551
Alignment:
Q  323 accaagaattgttccacccagaaattgaacttaggttcttccgaa 367  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||||    
T  48985507 accaagaattgttccacccatgaatcgaacttaggttctttcgaa 48985551  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 39526205 - 39526110
Alignment:
Q  324 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagt-cattagtggagctcattaaccacttgagcctaattgcttggtt 418  Q
    ||||||||||||||||| |||||| |||| |||||||| || ||||||| || | || ||||||||||||| ||||||||||| ||||||||||||    
T  39526205 ccaagaattgttccacctagaaatcgaacctaggttctcccaaacaattcgttctttggtggagctcattagccacttgagcccaattgcttggtt 39526110  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 419
Target Start/End: Original strand, 50414527 - 50414660
Alignment:
Q  286 gtaatccgaagtttggtcaggatgtaagtaaagt-tagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtgg 384  Q
    |||||||| |||| || ||||| ||||| ||||| ||| |||||||||||||||||||| |||||||||  |||||| | |||||||| ||| || ||||    
T  50414527 gtaatccgtagttcggccaggaggtaagaaaagtctag-ccaagaattgttccacccaggaattgaactcgggttctcctgaacaattcgtctttggtgg 50414625  T
Q  385 agctcattaaccacttgagcctaattgcttggttt 419  Q
    |||||||| ||||||||| |  ||||| |||||||    
T  50414626 agctcattgaccacttgatctcaattgtttggttt 50414660  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 402
Target Start/End: Complemental strand, 51316483 - 51316368
Alignment:
Q  286 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtgga 385  Q
    |||||| |||||| |||||||| ||||||||| |  ||| ||||||||||||||| | ||||  ||| | || |||||| || |||| |||||| ||| |    
T  51316483 gtaatctgaagttcggtcaggaggtaagtaaaatctgactaagaattgttccaccaaaaaatcaaac-tcggatcttccaaataattcgtcatttgtgaa 51316385  T
Q  386 gctcattaaccacttga 402  Q
     ||||||||||| ||||    
T  51316384 actcattaaccatttga 51316368  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 419
Target Start/End: Original strand, 25296829 - 25296925
Alignment:
Q  324 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggttt 419  Q
    ||||||||||||||||| || |||  |||| | ||||| | |||| ||| ||| || | |||||||||||||||||||||||| |||||||||||||    
T  25296829 ccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtcctttggtggagctcattaaccacttgagccaaattgcttggttt 25296925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 24978810 - 24978715
Alignment:
Q  324 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggtt 418  Q
    ||||||||||||||||| || ||| ||||| | ||||| || ||||||| ||| || | |||| ||||||||||||||||||| |||  |||||||    
T  24978810 ccaagaattgttccacctaggaatcgaactcacgttctcccaaacaatttgtcctttggtggaactcattaaccacttgagcccaatcacttggtt 24978715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 9705260 - 9705224
Alignment:
Q  384 gagctcattaaccacttgagcctaattgcttggtttc 420  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  9705260 gagctcgttaaccacttgagcctaatcgcttggtttc 9705224  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 418
Target Start/End: Complemental strand, 24667096 - 24667008
Alignment:
Q  330 attgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtt 418  Q
    |||||||||||||  ||||||||| ||||||| | |||||||| ||| || ||  | ||||||||||||||||||| |||| |||||||    
T  24667096 attgttccacccaagaattgaactcaggttctcctgaacaattcgtcctttgtaaaactcattaaccacttgagcccaattacttggtt 24667008  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 418
Target Start/End: Original strand, 9082315 - 9082437
Alignment:
Q  295 agtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaa 394  Q
    |||||||||||||||||| ||||||| |  | ||||||| || | | ||||| |||||| ||||| | | ||| ||||  || ||||||||||| |||||    
T  9082315 agtttggtcaggatgtaa-taaagtttggtcgagaattggtcaaactagaaactgaactcaggttttcctgaataattcatccttagtggagcttattaa 9082413  T
Q  395 ccacttgagcctaattgcttggtt 418  Q
    ||||||||||  ||||||||||||    
T  9082414 ccacttgagctcaattgcttggtt 9082437  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 5860883 - 5860976
Alignment:
Q  324 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtt 418  Q
    |||| |||| |||||||||||||| ||||| ||||||| | |||||| |  || ||||||||||||||| ||||||||| || | ||||||||||    
T  5860883 ccaaaaattcttccacccagaaatcgaactcaggttctcctgaacaactcatccttagtggagctcatt-accacttgaacccagttgcttggtt 5860976  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 407
Target Start/End: Original strand, 16263110 - 16263188
Alignment:
Q  329 aattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagccta 407  Q
    ||||||||||| ||||||||||||| ||||||| |  |||||||  || || |||| ||||||||||||||| ||||||    
T  16263110 aattgttccactcagaaattgaactcaggttctcctaaacaattcatccttggtggggctcattaaccactttagccta 16263188  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 28094225 - 28094136
Alignment:
Q  326 aagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttg 415  Q
    ||||||||||||| |||  ||||||||| ||||||| |   |||||| |||||| | |||||||||||||||||||||||| |||| ||||    
T  28094225 aagaattgttccatccaagaattgaact-aggttctcctacacaattcgtcatttggtggagctcattaaccacttgagcccaattacttg 28094136  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 14377747 - 14377701
Alignment:
Q  322 gaccaagaattgttccacccagaaattgaacttaggttcttccgaac 368  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||    
T  14377747 gaccaagaattgttccacccaaaaattgaacttgagttcttccgaac 14377701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 409
Target Start/End: Original strand, 15282037 - 15282121
Alignment:
Q  324 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaat 409  Q
    ||||||||||||||| | ||||||||||||| |||| ||| | || ||| ||| |  | |||||||||||||||||||||| ||||    
T  15282037 ccaagaattgttccaac-agaaattgaacttgggtttttctgcacgatttgtcctagggggagctcattaaccacttgagcttaat 15282121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 12023783 - 12023867
Alignment:
Q  322 gaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagt-cattagtggagctcattaaccacttgagcc 405  Q
    |||||||||||||||||||||| ||| |||||  ||| || |||||||||| || | || | ||||||||||||  |||||||||    
T  12023783 gaccaagaattgttccacccaggaatcgaactcgggtcctcccgaacaattcgtcctttggaggagctcattaataacttgagcc 12023867  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 6992136 - 6992041
Alignment:
Q  325 caagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggtttc 420  Q
    ||||||||||||||||||| ||| |||||  |||||| | |||||||| ||| || | || ||||||||| |||||||||||||||  |||||||||    
T  6992136 caagaattgttccacccaggaatcgaactc-ggttctccggaacaattcgtcctttggtgaagctcattatccacttgagcctaatcacttggtttc 6992041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 28562141 - 28562192
Alignment:
Q  365 gaacaattagtcattagtggagctcattaaccacttgagcctaattgcttgg 416  Q
    |||||||| |||||| ||||||||||||||||||||||| | |||| |||||    
T  28562141 gaacaattcgtcattggtggagctcattaaccacttgagtccaattacttgg 28562192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 24182268 - 24182345
Alignment:
Q  334 ttccacccagaaattgaacttaggttcttccgaacaattagtcatt-agtggagctcattaaccacttgagcctaatt 410  Q
    ||||||| | |||| ||||| ||||||| |||||||||| |||||| | ||||| | |||||||||||||| ||||||    
T  24182268 ttccacctaaaaatagaactcaggttctaccgaacaatttgtcatttaatggagtttattaaccacttgagtctaatt 24182345  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 27801180 - 27801233
Alignment:
Q  366 aacaattagtcattagtggagctcattaaccacttgagcctaattgcttggttt 419  Q
    |||||||| | ||| ||||||||||||||||| |||||| |||||| |||||||    
T  27801180 aacaattatttattggtggagctcattaaccaattgagcttaattgtttggttt 27801233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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