View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_38 (Length: 441)
Name: NF11538_low_38
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 7218269 - 7218675
Alignment:
| Q |
19 |
atcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggta |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218269 |
atcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggta |
7218368 |
T |
|
| Q |
119 |
aaaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7218369 |
aaaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgttgga |
7218468 |
T |
|
| Q |
219 |
aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218469 |
aagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcct |
7218568 |
T |
|
| Q |
319 |
gtcattagtaagaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
7218569 |
gtcattagtaagaatttattcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaacttacattattatttcttttttgta |
7218666 |
T |
|
| Q |
419 |
gtgatggcc |
427 |
Q |
| |
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||||||||| |
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| T |
7218667 |
gtgatggcc |
7218675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 163 - 410
Target Start/End: Complemental strand, 7317650 - 7317403
Alignment:
| Q |
163 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
262 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
7317650 |
ttgtttatttcagttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgc |
7317551 |
T |
|
| Q |
263 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgatt |
362 |
Q |
| |
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|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7317550 |
caaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgatt |
7317451 |
T |
|
| Q |
363 |
cattcatatatatgtacctcataagtgtgaacttacattattatttct |
410 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
7317450 |
cattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 166 - 349
Target Start/End: Original strand, 7243922 - 7244105
Alignment:
| Q |
166 |
tttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaa |
265 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7243922 |
tttatttcagttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaa |
7244021 |
T |
|
| Q |
266 |
acatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7244022 |
acatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 8161983 - 8162314
Alignment:
| Q |
19 |
atcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggta |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| || || | |||||||||||||| |
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|
| T |
8161983 |
atcactctccttaattccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttggta |
8162082 |
T |
|
| Q |
119 |
aaaat-tcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttgg |
217 |
Q |
| |
|
||||| ||||||||| || ||||||||||||| ||||| | |||||||| | |||||||||||||| | ||||||||||||| || | |||||| |
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|
| T |
8162083 |
aaaatatcttactttaatttgttttcatgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggatttgttgg |
8162182 |
T |
|
| Q |
218 |
a-aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattc |
316 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | |||| |
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|
| T |
8162183 |
acaaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattc |
8162282 |
T |
|
| Q |
317 |
ctgtcattagtaagaatttattcaactttaca |
348 |
Q |
| |
|
||| || |||||||||||||| ||||||||| |
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|
| T |
8162283 |
ctgctatcagtaagaatttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 7324439 - 7324256
Alignment:
| Q |
163 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
262 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
7324439 |
ttgtttatttcagttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgc |
7324340 |
T |
|
| Q |
263 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
346 |
Q |
| |
|
| |||||||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
7324339 |
cgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 7244127 - 7244204
Alignment:
| Q |
352 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
426 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatggc |
7244204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 7324222 - 7324158
Alignment:
| Q |
362 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
426 |
Q |
| |
|
|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatggc |
7324158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 8162379 - 8162417
Alignment:
| Q |
388 |
tgtgaacttacattattatttcttttttgtagtgatggc |
426 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatggc |
8162417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 22766478 - 22766295
Alignment:
| Q |
163 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
262 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
22766478 |
ttgtttatttcagttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgc |
22766379 |
T |
|
| Q |
263 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
346 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
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|
| T |
22766378 |
caaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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