View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_4 (Length: 864)
Name: NF11538_low_4
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 356 - 847
Target Start/End: Complemental strand, 3988697 - 3988207
Alignment:
| Q |
356 |
cccaccagtagatccatatccactagctcatactcgaatcttggtagaggtagaccccacattactctaaagaataggacaaagggtaagccaagtgtaa |
455 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3988697 |
cccaccggtagatccatatccactagctcatactcgaatcttggtagaggtagaccccacattactctaaagaataggacaaagggtaagccaagtgtaa |
3988598 |
T |
|
| Q |
456 |
attttcatttggacacttgtgaggtgacccgacccactacaacctctgtctgtcccacattcacctagtcttcattcttatccattttagtctcactatt |
555 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988597 |
attttaatttggacacttgtgaggtgacccgacccactacaacctctgtctgtcccacattcacctagtcttcattcttatccattttagtctcactatt |
3988498 |
T |
|
| Q |
556 |
tccactccttggtgtttttaccacattgccactcacaaatatctcgttagttacacttggaagcaggaaaacacttgatccaattttagccgtagatatt |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988497 |
tccactccttggtgtttttaccacattgccactcacaaatatctcgttagttacacttggaagcaggaaaacacttgatccaattttagccgtagatatt |
3988398 |
T |
|
| Q |
656 |
ttaagcatcactctcnnnnnnnnnnnnnngatagagtgcatacacaagcttagtat---aagaaccctcatattaatattagatatcatcaatcaatatt |
752 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3988397 |
ttaagcatcactctc----tctatatatagatagagtgcatacacaagcttaatataagaagaaccctcatattaatattagatattatcaatcaatatt |
3988302 |
T |
|
| Q |
753 |
tattttagttccaaaatgttagacaaactttgggatgatactgttgctggccctcaacctgagcgtggccttgagaagcttaggaagctaactac |
847 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988301 |
tattttagttccaaaatgttagacaaactttgggatgatactgttgctggccctcaacctgagcgtggccttgagaagcttaggaagctaactac |
3988207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 3990164 - 3989805
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagagaagg-attggaacaatttaggttgaatgggaacaaactcttgtgagtttgtgatttgtcgtaaaggaga |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3990164 |
ttttgtgaatttcatatcgaagaatgaagagaagggattggaacaatttaggttgaatgggaacaaactcttctgagtttgtgatttgtcgtaaaggaga |
3990065 |
T |
|
| Q |
100 |
tgaagttattttcttctaatatatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990064 |
tgaagttattttcttctaatatatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttc |
3989965 |
T |
|
| Q |
200 |
gtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaa |
299 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3989964 |
gtggggtccacatatgtaggtcacacaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggccaatcaaataaaaaattattaaatcaa |
3989865 |
T |
|
| Q |
300 |
tgtttaaaagtacaatttttctatcatagnnnnnnnttatccattcccatactaaaccca |
359 |
Q |
| |
|
| |||||||||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3989864 |
taattaaaagtacaacttttccatcataggaaaaaactatccattcccatactaaaccca |
3989805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 3800345 - 3800158
Alignment:
| Q |
121 |
tatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttcgtggggtccacatatgtgggt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3800345 |
tatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttcatggggtccacatatgtgggt |
3800246 |
T |
|
| Q |
221 |
cacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3800245 |
ca--caatactcaacaaaaagtatcaacaattatcaggtaattaatcttggccatccaaataaaaaattattaaatcaatggttaaaagt |
3800158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3800727 - 3800618
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagagaa-ggattggaacaatttaggttgaatgggaacaaactcttgtgagtttgtgatttgtcgtaaaggaga |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
3800727 |
ttttgtgaatttcatattgaagaaggaagagaagggattggaacaattaaggttgaatgggaacaaaccct-------------attgtcgtaaaggaga |
3800641 |
T |
|
| Q |
100 |
tgaagttattttcttctaatata |
122 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3800640 |
tgaagttattttcttctaatata |
3800618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 25066744 - 25066872
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagagaa-ggattggaacaatttaggttgaatgggaacaaactcttgtgagtttgtgatttgtcgtaaaggaga |
99 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |||||||||| | |
|
|
| T |
25066744 |
ttttgtgaatttcagattgaagaaggaagagaaaggattggaacaatttaggttaaatgacaacaaacccttccgagtttgtgatttctcgtaaaggata |
25066843 |
T |
|
| Q |
100 |
tgaagttattttcttctaatatatgacca |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
25066844 |
tgaaattattttcttctaatatatgacca |
25066872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 180 - 306
Target Start/End: Original strand, 25066915 - 25067038
Alignment:
| Q |
180 |
atggttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaa |
279 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| ||| || |
|
|
| T |
25066915 |
atggttattaaataattttcgtggggtccacatatg--ggtcacacaaaactcaacaaaaagtat-aacaattaccaggtaattaatcttggccatcaaa |
25067011 |
T |
|
| Q |
280 |
ataaaaaattattaaatcaatgtttaa |
306 |
Q |
| |
|
|||||||| ||||||||||||| |||| |
|
|
| T |
25067012 |
ataaaaaactattaaatcaatggttaa |
25067038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 16137404 - 16137260
Alignment:
| Q |
180 |
atggttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaa |
279 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
16137404 |
atggtttttaaatgattttcgtggggtccgaataaa--gatcacacaatgctcaacaaaaagtatcaacaattaccaagtaattaatcttgaccattcaa |
16137307 |
T |
|
| Q |
280 |
ataaaaaattattaaatcaatgtttaaaagtacaatttttctatcat |
326 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||| ||||| |
|
|
| T |
16137306 |
ataaaaaactattaaatcaatggctaaaagtataacttttccatcat |
16137260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 54089097 - 54089199
Alignment:
| Q |
183 |
gttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaata |
282 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
54089097 |
gttattaaatgattttcgtgggatccacaaatt--ggtcacacaatactcaacaaaaagtatcaacaattaccaggtaattaatcttggctattcaaata |
54089194 |
T |
|
| Q |
283 |
aaaaa |
287 |
Q |
| |
|
||||| |
|
|
| T |
54089195 |
aaaaa |
54089199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 27390359 - 27390274
Alignment:
| Q |
225 |
caatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
27390359 |
caatactcaataaaaagtatcaacaattaccaggtaattaatcttggcctttcaaataaaaaactattatatcaatggctaaaagt |
27390274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 183 - 358
Target Start/End: Complemental strand, 10255028 - 10254855
Alignment:
| Q |
183 |
gttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaata |
282 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | | |||||| ||||||| ||||||| || |||||||||| || |||||||||||||| ||| |||||| |
|
|
| T |
10255028 |
gttattaaatgatttttgtggggtccacgaa--ttggtcacacaatactaaacaaaaggtctcaacaattatcaggtaattaatcttggccatccaaata |
10254931 |
T |
|
| Q |
283 |
aaaaattattaaatcaatgtttaaaagtacaatttttctatcatagnnnnnnnttatccattcccatactaaaccc |
358 |
Q |
| |
|
||||| ||||| ||| ||| ||||| | ||| ||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
10254930 |
aaaaactattatatcgatggctaaaaatccaaattttccatcatggggaaaaactatccattcccatactaaaccc |
10254855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 5486915 - 5486841
Alignment:
| Q |
236 |
aaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
310 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| |||| ||| ||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
5486915 |
aaaaaggatcaacaattatcaggtaattaattttggtcatccaaataaaaaactattatatcaatggctaaaagt |
5486841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 11677957 - 11678050
Alignment:
| Q |
235 |
caaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatcatag |
328 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||| ||| |||||||| || ||||| ||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
11677957 |
caaaaaatatcaacaattactaggtaattaatcttggccatccaaataaagaactattatatcaatggctaaaagtgcaacttttctatcatag |
11678050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 8449282 - 8449167
Alignment:
| Q |
190 |
aatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaatt |
289 |
Q |
| |
|
||||||||| | |||||||||||||| |||| | ||| ||| |||||||||||| ||||||||||| |||||||| |||| ||| |||||||||| | |
|
|
| T |
8449282 |
aatgatttttgcggggtccacatatg--ggtcgcacaaaactgaacaaaaagtat-aacaattaccagataattaattttggtcatccaaataaaaagct |
8449186 |
T |
|
| Q |
290 |
attaaatcaatgtttaaaa |
308 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
8449185 |
attaaatcaatggttaaaa |
8449167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 32328687 - 32328778
Alignment:
| Q |
235 |
caaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatcat |
326 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||| |||||||| || ||||| ||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
32328687 |
caaaaagtatcaacaattatcaagtaattaatcttggccatccaaataaagaactattatatcaatggctaaaagtgcaactttcctatcat |
32328778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 37785567 - 37785662
Alignment:
| Q |
229 |
actcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatca |
325 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||| |||||||||||| || ||||| ||||||| |||||||| ||| ||| |||||| |
|
|
| T |
37785567 |
actcaacaaaaagtat-aacaattattaggtaattaatcttgaccattcaaataaacaactattatatcaatggttaaaagtgcaactttcctatca |
37785662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 24954569 - 24954670
Alignment:
| Q |
184 |
ttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataa |
283 |
Q |
| |
|
||||| ||||||||||||||||| |||| || |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
24954569 |
ttattaaatgattttcgtggggttcacaaatt--ggtcacataatactcaacaaaaagtat-aacaattatacggtaattaatcttggtcatccaaataa |
24954665 |
T |
|
| Q |
284 |
aaaat |
288 |
Q |
| |
|
||||| |
|
|
| T |
24954666 |
aaaat |
24954670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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