View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_40 (Length: 434)
Name: NF11538_low_40
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 4481234 - 4480824
Alignment:
| Q |
1 |
tatcggttctggtgtgtcactccctattcttgacgcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4481234 |
tatcagttctggtgtgtcactccctattcttgacgcacccttgttgtcaaatggtgagtctatcgatggaagcatcacagaaggcttctatgttcgtgat |
4481135 |
T |
|
| Q |
101 |
ttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaaca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4481134 |
ttcaaagtccaaagtttgatatctgagcatggtaagcggcggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaaca |
4481035 |
T |
|
| Q |
201 |
cacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
4481034 |
cacctttgtatgatcaagtacatcaggatcgtcttatttggaaagcagaaaggaatggttgttatacagtgcgaagtgcttatcgtttatgtgtggaaaa |
4480935 |
T |
|
| Q |
301 |
attaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4480934 |
attaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggcgtttgaaggttccaccaaaagttaaaaatttgttagtgcgtatgtgt |
4480835 |
T |
|
| Q |
401 |
tggggatgttt |
411 |
Q |
| |
|
|||||||||| |
|
|
| T |
4480834 |
cggggatgttt |
4480824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 411
Target Start/End: Complemental strand, 12527832 - 12527546
Alignment:
| Q |
125 |
gagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagtacatc |
224 |
Q |
| |
|
|||||||||||| | ||||| |||||||| |||| ||| ||||||||||||||||||||| || || ||| | || || ||||||||||||| || |
|
|
| T |
12527832 |
gagcatggtaagagttggaacgtgcctcttgttcaacagaattttagtaatgacatagttgaagcaatcttgcatacgcccctgtatgatcaagttattc |
12527733 |
T |
|
| Q |
225 |
aggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaatggatgtttcatatcttca |
324 |
Q |
| |
|
| || ||||| |||| |||||| || | || |||||||| || | ||||| ||||| |||||||||||| | | ||||||||||| | |||| |
|
|
| T |
12527732 |
atgaccgtctcatttggaaagcggaaggaaacaaatgttatacggtgaggagtgcatatcggttatgtgtggaagagctgatggatgtttctcaccttcg |
12527633 |
T |
|
| Q |
325 |
tcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatgttt |
411 |
Q |
| |
|
|| ||| ||||||||| | ||||||||||| || |||||||| ||||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12527632 |
tcatccaggtagttggcagaacatttggtgtttaaaggttccgccaaaggttaaaaatctgttatggcgtatgtgtcggggatgttt |
12527546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 408
Target Start/End: Original strand, 14484407 - 14484687
Alignment:
| Q |
128 |
catggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagtacatcagg |
227 |
Q |
| |
|
||||||||| | ||||||| |||||| |||| ||| | |||||||||||||||| ||| || ||||| | || || ||||||||||||| | | |
|
|
| T |
14484407 |
catggtaagagttggaatgagcctcttgttcaacagatgtttagtaatgacatagctgaagcgattttacatacgcccctgtatgatcaagttaccaacg |
14484506 |
T |
|
| Q |
228 |
atcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaatggatgtttcatatcttcatcg |
327 |
Q |
| |
|
|| ||||| ||| |||||| |||| |||||||||||| | || | ||||| |||||||||| ||||||| ||||||| |||||||| |||||| | | |
|
|
| T |
14484507 |
attgtcttgtttggaaagcggaaagaaatggttgttattcggtgcggagtgcatatcgtttatatgtggaagaattaattgatgtttcccatcttcgtag |
14484606 |
T |
|
| Q |
328 |
tccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatg |
408 |
Q |
| |
|
|| |||| |||| | | ||||||| ||||| ||| | ||||| || |||||| | |||||| |||||||| ||||||| |
|
|
| T |
14484607 |
gccaggtaattggcagcatatttggtatttgaaagtttcgccaaaggtgaaaaatctcttatggtgtatgtgtcggggatg |
14484687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 8863562 - 8863152
Alignment:
| Q |
1 |
tatcggttctggtgtgtcactccctattcttgacgcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgat |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8863562 |
tatcggttatggtgtgtcaatccctattcttgacgcaccctggttgtcaaatggtgagtctatcgatggaagcatcacgggaggcttctatgttcgtgat |
8863463 |
T |
|
| Q |
101 |
ttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaaca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8863462 |
ttcaaagtccaaagtttgatatctgagcatggtaagcggtggaatatgcctctagttcgacaagtttttagtaatgacatagctgatgccattttgaaca |
8863363 |
T |
|
| Q |
201 |
cacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
8863362 |
cacctttgtatgatcaactacatcaggatcatcttatttggaaagcagaaaggaatggttgttatacagtgcgaagtgcttatcgtttatgtgtggaaga |
8863263 |
T |
|
| Q |
301 |
attaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgt |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
8863262 |
attggtggatgtttcatatcttcatcgtccgggtagttggaataacatttggcgcttgaaggttccaccaaaagttaaaaaaattttatggcgtatgtgt |
8863163 |
T |
|
| Q |
401 |
tggggatgttt |
411 |
Q |
| |
|
|||||||||| |
|
|
| T |
8863162 |
cggggatgttt |
8863152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 13639809 - 13639410
Alignment:
| Q |
1 |
tatcggttctggtgtgtcactccctattcttgacgcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgat |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13639809 |
tatcggttctggtgtgtcaatcactattcttgacgaaccctggttgtcaaatggtgagtctatcgatggaaacatcacgggaggcttctatgttcgtgat |
13639710 |
T |
|
| Q |
101 |
ttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaaca |
200 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
13639709 |
ttcaaagtcctaagtttgatatctgagcatggtaagcggtggaatgtgcctcaagttcgacaagtttttagtaatgacatagcttatgccatttggaaca |
13639610 |
T |
|
| Q |
201 |
cacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
13639609 |
cacctttgtatgatcaagtacatcgggatcgtcttatttggaaagcagaaaggaatggttgttatacaatgcgaagtgcttatcgtttatgtgtggaaga |
13639510 |
T |
|
| Q |
301 |
attaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgt |
400 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
13639509 |
attagtggatgtatcatatcttcatcgtccgggtagttggaataacattt--agcat---------accaaaagttaaaaatttgttatggcgtatgtgt |
13639421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 17207198 - 17207072
Alignment:
| Q |
288 |
tatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgtt |
387 |
Q |
| |
|
||||||||||| | ||||| ||||| || | || | |||||| |||| |||| | || |||||| | || || ||||| ||||||||| |||||||||| |
|
|
| T |
17207198 |
tatgtgtggaagagttaattgatgtgtctcacctccgtcgtccaggtaattggtagaatatttggcgtttaaaagttccgccaaaagtttaaaatttgtt |
17207099 |
T |
|
| Q |
388 |
atggcgtatgtgttggggatgtttgtc |
414 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
17207098 |
atggcgtatgtgttgcggatgtttgtc |
17207072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 411
Target Start/End: Complemental strand, 41865738 - 41865434
Alignment:
| Q |
107 |
gttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctt |
206 |
Q |
| |
|
||||||||||| ||||||||||| || | | ||||| | |||||| |||| ||| |||||||||| ||||||| ||| ||| || | || || | |
|
|
| T |
41865738 |
gttcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaacagatttttagtaacgacatagctgaaaaaattatgcatacgccct |
41865639 |
T |
|
| Q |
207 |
tgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaat |
306 |
Q |
| |
|
||||||||||||| || |||||||| || | |||||| |||| |||||||||||| | || | || || || || |||||||||||| ||||||| |
|
|
| T |
41865638 |
tgtatgatcaagtcagccatgatcgtctcatatggaaagcggaaagtaatggttgttattcggtgcggagcgcataccgcttatgtgtggaagaattaat |
41865539 |
T |
|
| Q |
307 |
ggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttgggga |
406 |
Q |
| |
|
||||| || |||| | |||||| |||| |||| | || |||||| | || ||||||| | |||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
41865538 |
tgatgtgtctcatctccgtcgtcccggtaattggcagaatatttggcgtttaaaggttctggcgaaagttaaaaatctgttatggcgtatgtgtcgtgga |
41865439 |
T |
|
| Q |
407 |
tgttt |
411 |
Q |
| |
|
||||| |
|
|
| T |
41865438 |
tgttt |
41865434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 49 - 411
Target Start/End: Complemental strand, 30847975 - 30847613
Alignment:
| Q |
49 |
aaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgatttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtg |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30847975 |
aaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgatttcaaagtccaaagtttgatatctgagcatggtaagcggtggaatgtg |
30847876 |
T |
|
| Q |
149 |
cctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30847875 |
cctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagtacatcaggatcgtcttatttggaaagcag |
30847776 |
T |
|
| Q |
249 |
aaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttggaataacat |
348 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30847775 |
aaaggaatggttgttatacagtgcgaagtgcttatggtttatgtgtggaagaattagtggatgtttcatatcttcatcgtccgggtagttggaataacat |
30847676 |
T |
|
| Q |
349 |
ttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatgttt |
411 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
30847675 |
ttggcgcttgaaggttccaccaaaagttaaaaatttgttatggcatatgtgtcagggatgttt |
30847613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 294
Target Start/End: Original strand, 20608139 - 20608343
Alignment:
| Q |
90 |
atgttcgtgatttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgc |
189 |
Q |
| |
|
||||| |||||| ||||||||| |||| | | ||||||||| ||| ||||||| |||||| || | || || |||||||||||||| ||||| || |
|
|
| T |
20608139 |
atgtttgtgattataaagttcaatgtttactgtttgagcatggcaaggtttggaatgcgcctcttattaggcaggtgtttagtaatgacattgttgaagc |
20608238 |
T |
|
| Q |
190 |
cattttgaacacacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgttta |
289 |
Q |
| |
|
||||||||| || || |||||||| ||||| || | ||||| ||||| | |||||| || | |||| |||||||| ||||||||||||| ||| || |
|
|
| T |
20608239 |
cattttgaatacgcccttgtatgaacaagttcaaaatgatcgccttatatcgaaagcgaagatgaatagttgttatttggtgtgaagtgcttaccgtcta |
20608338 |
T |
|
| Q |
290 |
tgtgt |
294 |
Q |
| |
|
||||| |
|
|
| T |
20608339 |
tgtgt |
20608343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 241 - 411
Target Start/End: Original strand, 45599896 - 45600066
Alignment:
| Q |
241 |
gaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttgg |
340 |
Q |
| |
|
||||||| |||||||||||||||||| | || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45599896 |
gaaagcagaaaggaatggttgttatatagtgcgaagtgcttatcgtttatgtgtggaagaattagtggatgtttcatatcttcatcgtccgggtagttgg |
45599995 |
T |
|
| Q |
341 |
aataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatgttt |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |
|
|
| T |
45599996 |
aataacatttggcgcttgaaggttccaccaaaagttaaaaatttcttatggcatatgtgtcgaggatgttt |
45600066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 408
Target Start/End: Original strand, 17177705 - 17178031
Alignment:
| Q |
82 |
aggcttctatgttcgtgatttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacata |
181 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || |||| || ||||| ||| | ||||| ||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
17177705 |
aggcttttatgttcgtgatttcaatgttcaaagcttattatcggatcatggcaagagttggaacgtgcctctagtccaacagatttttagtactgacata |
17177804 |
T |
|
| Q |
182 |
gttgatgccattttgaacacacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgctt |
281 |
Q |
| |
|
| ||| || ||||| | || ||| |||||||||||| ||| || ||||| |||| |||| | |||| || ||||||||| | || | ||||| | |
|
|
| T |
17177805 |
gctgaagcagttttgcatacgcctcagtatgatcaagttattcatgaccgtctcatttggaaatcggaaagaaacggttgttattcggtgcggagtgcat |
17177904 |
T |
|
| Q |
282 |
atcgtttatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaa |
381 |
Q |
| |
|
|||| |||||||| ||| | |||| |||||||| | || | | |||| |||| |||| | || |||||||| || ||||||| || || |||||||| |
|
|
| T |
17177905 |
atcgattatgtgtcgaagagctaattgatgtttctcacctgcgttgtccaggtaattggtagaatatttggtgtttaaaggttctgccgaaggttaaaaa |
17178004 |
T |
|
| Q |
382 |
tttgttatggcgtatgtgttggggatg |
408 |
Q |
| |
|
| ||||||||||||||||| ||||||| |
|
|
| T |
17178005 |
tctgttatggcgtatgtgtcggggatg |
17178031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 28383906 - 28384082
Alignment:
| Q |
35 |
gcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgatttcaaagttcaaagtttgatatctgagcatggta |
134 |
Q |
| |
|
||||||| |||||| || ||||||| ||| ||||| | || | |||||||||||| ||||| |||| |||||| | ||||| || ||||| |||||| |
|
|
| T |
28383906 |
gcaccctggttgtctaacggtgagtttattgatggtaatatagcgggaggcttctatattcgtaattttaaagttaacagtttactagctgagaatggta |
28384005 |
T |
|
| Q |
135 |
agcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtat |
211 |
Q |
| |
|
|| |||||||||||||| || | ||||| ||||| || ||||| | ||| ||||||||||| || || |||||| |
|
|
| T |
28384006 |
aggtttggaatgtgcctcttattaggcaagtgtttagcaacgacattgctgaagccattttgaatacgcccttgtat |
28384082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 38490108 - 38490003
Alignment:
| Q |
140 |
tggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagtacatcaggatcgtcttattt |
239 |
Q |
| |
|
|||||||||||||| || | ||||| ||||| || ||||| | ||| ||||||||||| ||||| |||||||| || || || | ||||||||||||| |
|
|
| T |
38490108 |
tggaatgtgcctcttattaggcaagtgtttagcaacgacattgctgaagccattttgaatacacccttgtatgaacaggttcagaatgatcgtcttattt |
38490009 |
T |
|
| Q |
240 |
agaaag |
245 |
Q |
| |
|
||||| |
|
|
| T |
38490008 |
ggaaag |
38490003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 13812982 - 13812575
Alignment:
| Q |
1 |
tatcggttctggtgtgtcactccctattcttgacgcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgat |
100 |
Q |
| |
|
||||||||| |||| ||| ||| ||||||||| ||||| | ||||| ||||||| | ||| ||||| || || | |||||||| ||||| |||||| |
|
|
| T |
13812982 |
tatcggttcgggtgcatcaatccatattcttgatgcaccatggttgttgaatggtgggattatagatggcagtattgcgggaggcttttatgtccgtgat |
13812883 |
T |
|
| Q |
101 |
ttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaaca |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||| |||||||| ||| ||||| || | | |
|
|
| T |
13812882 |
ttcaaagtgcaaagtttaatatctgagcagggtaagcgatggaatgtgcctcttgttcgacaggtttttagttctgacatagccgataccattctgcaaa |
13812783 |
T |
|
| Q |
201 |
cacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaa |
300 |
Q |
| |
|
|||| ||||||| || || || || |||||| | |||| |||||| ||||||||||||||||| | | | |||||||||| |||||||||||| | |
|
|
| T |
13812782 |
caccactgtatgagcaggtccagcatgatcgtttcatttggaaagcggaaaggaatggttgttattcggtaaggagtgcttatcacttatgtgtggaaga |
13812683 |
T |
|
| Q |
301 |
attaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgt |
400 |
Q |
| |
|
|||| |||||||||| ||| ||||| || |||| ||||||| | |||||| | || |||||||| || ||||| |||||| |||||||||| |||||| |
|
|
| T |
13812682 |
attagtggatgtttctcatcaccatcgcccaggtaattggaatgatatttggcgtttaaaggttcctccgaaagtcaaaaatctgttatggcgaatgtgt |
13812583 |
T |
|
| Q |
401 |
tggggatg |
408 |
Q |
| |
|
||||||| |
|
|
| T |
13812582 |
aggggatg |
13812575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 13701751 - 13701621
Alignment:
| Q |
89 |
tatgttcgtgatttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatg |
188 |
Q |
| |
|
|||||| |||||||||| |||||||| || |||| |||||||||||| | |||||||||||||| |||| ||| |||||||||||||||||| ||| | |
|
|
| T |
13701751 |
tatgtttgtgatttcaatgttcaaagcttattatcggagcatggtaagagttggaatgtgcctctggttcaacagatttttagtaatgacatagctgaag |
13701652 |
T |
|
| Q |
189 |
ccattttgaacacacctttgtatgatcaagt |
219 |
Q |
| |
|
| |||||| | || || ||||||||||||| |
|
|
| T |
13701651 |
cgattttgcatacgccactgtatgatcaagt |
13701621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 13701376 - 13701273
Alignment:
| Q |
305 |
atggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggg |
404 |
Q |
| |
|
||||||||||| | |||| |||||| ||||||||| | ||||||||| | || ||||||| || || ||||||||| ||||||||||||||||| ||| |
|
|
| T |
13701376 |
atggatgtttctcaccttcgtcgtccaggtagttggcagaacatttggcgtttaaaggttctgccgaaggttaaaaatctgttatggcgtatgtgtcggg |
13701277 |
T |
|
| Q |
405 |
gatg |
408 |
Q |
| |
|
|||| |
|
|
| T |
13701276 |
gatg |
13701273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 33479201 - 33479591
Alignment:
| Q |
21 |
tccctattcttgacgcaccctagttgtcaaatggtgagtctatcgatggaagcatcacaggaggcttctatgttcgtgatttcaaagttcaaagtttgat |
120 |
Q |
| |
|
||||||||||||| ||||| | |||| |||||||||||||| ||||| ||||| ||||||||||||||| | ||||| || || ||||| ||| | |
|
|
| T |
33479201 |
tccctattcttgatgcaccatgactgtctaatggtgagtctattgatggtcacatcattggaggcttctatgtttgcgattttaatgtccaaagcttgtt |
33479300 |
T |
|
| Q |
121 |
atctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacatagttgatgccattttgaacacacctttgtatgatcaagta |
220 |
Q |
| |
|
| ||||||||||||| | ||||| | |||||| |||||||| |||||||||||||||||| |||||| |||||| | ||| | ||||||||||||| |
|
|
| T |
33479301 |
acatgagcatggtaagagttggaacgagcctcttgttcgacagatttttagtaatgacatagctgatgcaattttgcatacaaccctgtatgatcaagtc |
33479400 |
T |
|
| Q |
221 |
catcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgcttatcgtttatgtgtggaaaaattaatggatgtttcatatc |
320 |
Q |
| |
|
|| |||||| | |||| |||||| || | |||||||||||||| | | ||||| || |||||||||||| | ||||| |||||||| ||| |
|
|
| T |
33479401 |
acccatgatcgtatcatttggaaagcggaaggaaatggttgttatacggtacggagtgcatacaaattatgtgtggaagagttaattgatgtttctcatc |
33479500 |
T |
|
| Q |
321 |
ttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatgttt |
411 |
Q |
| |
|
||| |||||| |||| |||||| || ||||||| ||| ||||||| || || |||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
33479501 |
ttcgtcgtccaggtaattggaagaatttttggtgtttggaggttccgccgaaggttaaaaatttgctatggcaaatgtgtaggggatgttt |
33479591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 82 - 408
Target Start/End: Complemental strand, 27010978 - 27010652
Alignment:
| Q |
82 |
aggcttctatgttcgtgatttcaaagttcaaagtttgatatctgagcatggtaagcggtggaatgtgcctctagttcgacaagtttttagtaatgacata |
181 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || |||| || ||||| ||| | ||||| ||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
27010978 |
aggcttttatgttcgtgatttcaatgttcaaagcttattatcggatcatggcaagagttggaacgtgcctctagtccaacaaatttttagtgctgacata |
27010879 |
T |
|
| Q |
182 |
gttgatgccattttgaacacacctttgtatgatcaagtacatcaggatcgtcttatttagaaagcaaaaaggaatggttgttatacaatgtgaagtgctt |
281 |
Q |
| |
|
| ||| || ||||| | || ||| ||||||||||||| ||| || ||||||||| |||| | |||| || ||||||||| | ||| | ||||| | |
|
|
| T |
27010878 |
gctgaagcagttttgcatacgcctctgtatgatcaagttattcatgactgtcttatttggaaatcggaaagaaacggttgttatccgatgcggagtgcat |
27010779 |
T |
|
| Q |
282 |
atcgtttatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaa |
381 |
Q |
| |
|
|||| |||||||| ||| | |||| |||||||| | || | | ||| |||| |||| | || |||||||| || ||||||| || || |||||||| |
|
|
| T |
27010778 |
atcgattatgtgtcgaagagctaattgatgtttctcacctgcgttgtctaggtaattggcagaatatttggtgtttaaaggttcagccgaaggttaaaaa |
27010679 |
T |
|
| Q |
382 |
tttgttatggcgtatgtgttggggatg |
408 |
Q |
| |
|
| ||||||||||||||||| ||||||| |
|
|
| T |
27010678 |
tatgttatggcgtatgtgtcggggatg |
27010652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 411
Target Start/End: Complemental strand, 22787113 - 22787020
Alignment:
| Q |
318 |
atcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaatttgttatggcgtatgtgttggggatgttt |
411 |
Q |
| |
|
|||||||||||||||| | |||||| | |||||| | | ||||||||||||||| |||| ||||||||||| |||||||| |||| ||||| |
|
|
| T |
22787113 |
atcttcatcgtccgggcaattggaaggatatttggcggcttaaggttccaccaaaaattaagcatttgttatggtgtatgtgtaggggttgttt |
22787020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 395
Target Start/End: Original strand, 18610215 - 18610325
Alignment:
| Q |
285 |
gtttatgtgtggaaaaattaatggatgtttcatatcttcatcgtccgggtagttggaataacatttggtgcttgaaggttccaccaaaagttaaaaattt |
384 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||| |||||||||| ||||| | |||||| | |||||||| | |||||||| ||||| |||| || | |
|
|
| T |
18610215 |
gtttatgtgttgaagaattaatcgatgtttctcatcttcatcgaccgggcaattggaaagatatttggtggcttaaggttccgccaaagattaagcatct |
18610314 |
T |
|
| Q |
385 |
gttatggcgta |
395 |
Q |
| |
|
||||||||||| |
|
|
| T |
18610315 |
gttatggcgta |
18610325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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