View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_41 (Length: 430)

Name: NF11538_low_41
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_41
NF11538_low_41
[»] chr7 (27 HSPs)
chr7 (226-418)||(34389053-34389243)
chr7 (229-418)||(37002141-37002328)
chr7 (229-418)||(26624728-26624916)
chr7 (235-418)||(8867728-8867909)
chr7 (259-418)||(35090181-35090338)
chr7 (229-418)||(7002708-7002895)
chr7 (229-418)||(7048579-7048766)
chr7 (229-418)||(43184465-43184652)
chr7 (262-414)||(38638237-38638387)
chr7 (229-416)||(33685547-33685732)
chr7 (265-418)||(36658200-36658351)
chr7 (246-418)||(5555487-5555657)
chr7 (262-418)||(40920000-40920154)
chr7 (249-418)||(3114093-3114260)
chr7 (246-418)||(8394125-8394295)
chr7 (246-418)||(36630816-36630986)
chr7 (247-418)||(14777104-14777273)
chr7 (92-218)||(27954606-27954731)
chr7 (92-213)||(27951369-27951489)
chr7 (92-225)||(29864468-29864600)
chr7 (133-223)||(28958459-28958548)
chr7 (243-291)||(10876829-10876877)
chr7 (102-225)||(20403620-20403742)
chr7 (381-418)||(10868453-10868490)
chr7 (230-282)||(37966614-37966666)
chr7 (246-323)||(26502810-26502887)
chr7 (246-323)||(26589827-26589904)
[»] chr2 (28 HSPs)
chr2 (21-222)||(2412935-2413128)
chr2 (229-418)||(45418566-45418753)
chr2 (229-418)||(44084600-44084787)
chr2 (229-414)||(8147334-8147518)
chr2 (229-414)||(770977-771165)
chr2 (265-418)||(12756834-12756985)
chr2 (246-418)||(35962715-35962885)
chr2 (249-418)||(41251631-41251798)
chr2 (246-418)||(42439986-42440156)
chr2 (229-418)||(8059330-8059517)
chr2 (92-225)||(31758331-31758463)
chr2 (246-418)||(31581619-31581789)
chr2 (246-418)||(32127138-32127308)
chr2 (252-418)||(18981622-18981786)
chr2 (246-418)||(17445038-17445206)
chr2 (247-418)||(6403801-6403970)
chr2 (249-418)||(16405603-16405770)
chr2 (246-385)||(2958131-2958267)
chr2 (340-418)||(2285954-2286032)
chr2 (92-213)||(40200005-40200125)
chr2 (340-418)||(26162699-26162774)
chr2 (242-326)||(26237953-26238036)
chr2 (266-325)||(34905969-34906028)
chr2 (238-326)||(4555298-4555385)
chr2 (259-322)||(7072643-7072706)
chr2 (385-418)||(26238080-26238113)
chr2 (229-301)||(34523223-34523295)
chr2 (381-418)||(4555189-4555226)
[»] chr3 (22 HSPs)
chr3 (229-418)||(45182964-45183151)
chr3 (226-418)||(11018209-11018399)
chr3 (229-418)||(6930891-6931078)
chr3 (229-418)||(33040936-33041123)
chr3 (226-418)||(6503566-6503756)
chr3 (226-418)||(27935158-27935348)
chr3 (246-418)||(19390146-19390316)
chr3 (247-414)||(6269427-6269592)
chr3 (247-418)||(22968441-22968610)
chr3 (229-418)||(19565498-19565685)
chr3 (235-418)||(35514255-35514432)
chr3 (229-418)||(45335858-45336044)
chr3 (246-418)||(34084119-34084289)
chr3 (247-418)||(39771791-39771960)
chr3 (259-418)||(40081738-40081893)
chr3 (92-225)||(25805039-25805172)
chr3 (367-418)||(22922214-22922265)
chr3 (229-283)||(6890981-6891035)
chr3 (381-418)||(5135421-5135458)
chr3 (262-326)||(5135285-5135349)
chr3 (235-295)||(5354698-5354758)
chr3 (246-294)||(22922157-22922205)
[»] chr5 (24 HSPs)
chr5 (229-418)||(31680350-31680537)
chr5 (229-418)||(12278857-12279044)
chr5 (229-418)||(17332548-17332735)
chr5 (226-418)||(37254621-37254811)
chr5 (229-416)||(31501715-31501900)
chr5 (260-418)||(33430335-33430491)
chr5 (246-418)||(10033927-10034097)
chr5 (246-418)||(13817977-13818147)
chr5 (246-418)||(39657503-39657673)
chr5 (246-418)||(36293618-36293788)
chr5 (265-418)||(16155016-16155167)
chr5 (246-418)||(39434696-39434866)
chr5 (229-418)||(36291354-36291541)
chr5 (263-418)||(43068894-43069047)
chr5 (276-418)||(16333873-16334013)
chr5 (247-418)||(26283315-26283484)
chr5 (248-414)||(1776377-1776541)
chr5 (248-415)||(19985941-19986106)
chr5 (257-326)||(28801298-28801367)
chr5 (340-399)||(3155647-3155706)
chr5 (229-323)||(202622-202716)
chr5 (229-301)||(26543877-26543949)
chr5 (246-325)||(3155719-3155798)
chr5 (381-418)||(28801439-28801476)
[»] chr6 (13 HSPs)
chr6 (229-418)||(28996713-28996900)
chr6 (246-418)||(18339106-18339276)
chr6 (92-225)||(14354885-14355017)
chr6 (229-418)||(29743266-29743453)
chr6 (246-418)||(34948755-34948925)
chr6 (246-418)||(13837821-13837991)
chr6 (247-418)||(398618-398787)
chr6 (265-418)||(33229333-33229484)
chr6 (230-326)||(24697904-24698000)
chr6 (235-326)||(31028451-31028542)
chr6 (229-282)||(13647000-13647053)
chr6 (229-282)||(34385519-34385572)
chr6 (274-323)||(24072576-24072625)
[»] chr4 (45 HSPs)
chr4 (229-418)||(3292893-3293080)
chr4 (229-418)||(6690232-6690419)
chr4 (226-418)||(43143581-43143771)
chr4 (236-418)||(30216739-30216919)
chr4 (229-418)||(50205074-50205261)
chr4 (226-418)||(42333773-42333963)
chr4 (235-418)||(48989317-48989498)
chr4 (265-418)||(44156670-44156821)
chr4 (229-418)||(10352881-10353068)
chr4 (246-418)||(25930708-25930878)
chr4 (270-418)||(35545977-35546123)
chr4 (246-418)||(36382343-36382512)
chr4 (247-418)||(20129311-20129480)
chr4 (229-416)||(26448036-26448220)
chr4 (229-416)||(29995982-29996167)
chr4 (92-225)||(9417409-9417541)
chr4 (249-418)||(29319702-29319869)
chr4 (340-418)||(6235612-6235690)
chr4 (229-418)||(28877247-28877434)
chr4 (247-418)||(26439276-26439445)
chr4 (247-418)||(34407281-34407450)
chr4 (247-418)||(47500774-47500943)
chr4 (247-418)||(13012189-13012358)
chr4 (340-418)||(1817809-1817887)
chr4 (340-418)||(13392878-13392956)
chr4 (340-418)||(13396017-13396095)
chr4 (232-326)||(30109942-30110036)
chr4 (247-418)||(43355905-43356074)
chr4 (259-418)||(40529028-40529185)
chr4 (270-418)||(17511230-17511377)
chr4 (226-326)||(48129950-48130046)
chr4 (229-418)||(30077628-30077814)
chr4 (229-283)||(49908782-49908836)
chr4 (271-324)||(6254569-6254622)
chr4 (226-287)||(7769308-7769369)
chr4 (246-326)||(27363361-27363441)
chr4 (235-326)||(45194165-45194256)
chr4 (229-283)||(5517494-5517548)
chr4 (229-282)||(17554979-17555032)
chr4 (381-418)||(30110108-30110145)
chr4 (381-418)||(48130111-48130148)
chr4 (229-282)||(6212029-6212082)
chr4 (229-294)||(13392989-13393054)
chr4 (229-294)||(13396128-13396193)
chr4 (230-283)||(50720476-50720529)
[»] chr8 (17 HSPs)
chr8 (229-418)||(23402091-23402278)
chr8 (242-418)||(16788022-16788196)
chr8 (226-418)||(4403988-4404178)
chr8 (226-418)||(34136822-34137012)
chr8 (92-225)||(21692224-21692356)
chr8 (229-418)||(2729193-2729380)
chr8 (235-418)||(36408540-36408721)
chr8 (260-416)||(3648793-3648947)
chr8 (246-418)||(29728383-29728553)
chr8 (246-412)||(15838286-15838449)
chr8 (268-418)||(9877242-9877390)
chr8 (247-418)||(39914516-39914684)
chr8 (340-416)||(42231029-42231105)
chr8 (265-326)||(3435288-3435349)
chr8 (269-325)||(40470581-40470637)
chr8 (381-418)||(40470472-40470509)
chr8 (238-321)||(10397132-10397215)
[»] scaffold0502 (1 HSPs)
scaffold0502 (246-418)||(5230-5400)
[»] chr1 (17 HSPs)
chr1 (226-418)||(35907532-35907722)
chr1 (229-414)||(17445296-17445479)
chr1 (229-418)||(321374-321561)
chr1 (229-418)||(3828967-3829153)
chr1 (250-418)||(7433449-7433615)
chr1 (265-418)||(42310938-42311089)
chr1 (247-418)||(26144256-26144425)
chr1 (246-418)||(32982053-32982223)
chr1 (229-326)||(41972362-41972458)
chr1 (229-326)||(33489670-33489767)
chr1 (381-418)||(33489839-33489876)
chr1 (381-418)||(41972253-41972290)
chr1 (219-282)||(44352614-44352677)
chr1 (229-283)||(31866960-31867014)
chr1 (261-323)||(35951435-35951497)
chr1 (229-311)||(48901207-48901288)
chr1 (381-418)||(28463231-28463268)
[»] scaffold0154 (1 HSPs)
scaffold0154 (229-418)||(31463-31650)
[»] scaffold0041 (1 HSPs)
scaffold0041 (262-418)||(52941-53095)
[»] scaffold0069 (1 HSPs)
scaffold0069 (246-418)||(17842-18012)
[»] scaffold0002 (1 HSPs)
scaffold0002 (247-418)||(480454-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (247-418)||(523-692)
[»] scaffold0769 (1 HSPs)
scaffold0769 (229-301)||(1260-1332)
[»] scaffold0012 (1 HSPs)
scaffold0012 (239-301)||(194021-194083)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 34389243 - 34389053
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  34389243 catgggcgatttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacactta 34389144  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  34389143 c--aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctctct 34389053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 37002328 - 37002141
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      
T  37002328 gggcggtttcaccgcccggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttac-- 37002231  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37002230 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 37002141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 26624728 - 26624916
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgat-cgataatttttgcacattagacccaatccaaaagccaattaacacacttacn 327  Q
    ||||| |||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||||||     
T  26624728 gggcggtttcaccgcccggcaaccccgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttaca 26624827  T
Q  328 nnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26624828 aaaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 26624916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 235 - 418
Target Start/End: Complemental strand, 8867909 - 8867728
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnn 334  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||            
T  8867909 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttac--aaaaag 8867812  T
Q  335 nnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
         ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  8867811 aaaaatttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatcactct 8867728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 259 - 418
Target Start/End: Original strand, 35090181 - 35090338
Alignment:
Q  259 ggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaatt 358  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||             |||||| ||||||||||||    
T  35090181 ggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa--tttgggtaatctgaaaatt 35090278  T
Q  359 ctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35090279 ctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 35090338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 7002708 - 7002895
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||| | ||||| ||||||||||||||  ||||||  |||||| |||||| |||||||||||||||||||| |||      
T  7002708 gggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaa 7002807  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7002808 aaataaaaa--tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7002895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 7048579 - 7048766
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||| | ||||| ||||||||||||||  ||||||  |||||| |||||| |||||||||||||||||||| |||      
T  7048579 gggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaa 7048678  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7048679 aaataaaaa--tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7048766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 43184652 - 43184465
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||  ||||| |||||  ||||||||||||||||||||| | ||| ||||  || ||||||||||||||||| ||||||      
T  43184652 gggcggtttcaccgcccggcgattccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaa 43184553  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43184552 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 43184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 262 - 414
Target Start/End: Complemental strand, 38638387 - 38638237
Alignment:
Q  262 cgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctc 361  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||             ||||||||||||||||||||||    
T  38638387 cgtccgagctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaa--tttgggcaatctgaaaattctc 38638290  T
Q  362 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38638289 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 229 - 416
Target Start/End: Original strand, 33685547 - 33685732
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||||||||||| ||  ||||  ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||      
T  33685547 gggcggtttcaccgcccggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttac-- 33685644  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
               ||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||||||| ||||||    
T  33685645 aaaaagaaaaatttgggcaatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgggtttatctct 33685732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 36658200 - 36658351
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    |||| |||||||||||||||||||||||| ||||||| | ||||||||||||||| ||| ||             |||||||||||||||||||||||||    
T  36658200 ccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaa--tttgggcaatctgaaaattctcaca 36658297  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36658298 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 36658351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 5555487 - 5555657
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| || ||||             ||||||    
T  5555487 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaa--tttggg 5555584  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  5555585 caatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 5555657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 418
Target Start/End: Complemental strand, 40920154 - 40920000
Alignment:
Q  262 cgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctc 361  Q
    |||||||||||||||||||||||||||||||||||   || ||||||||||||||||||| ||||             ||||| ||||||||||||||||    
T  40920154 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaa--tttggacaatctgaaaattctc 40920057  T
Q  362 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40920056 acatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 40920000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 3114260 - 3114093
Alignment:
Q  249 gaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaa 348  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             |||||||||    
T  3114260 gaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttgggcaa 3114163  T
Q  349 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  3114162 tctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 3114093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 8394125 - 8394295
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| || ||| | ||||| | ||||||||| ||||             ||||||    
T  8394125 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaa--tttggg 8394222  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  8394223 caatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctctct 8394295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 36630816 - 36630986
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||| || ||| | ||||| | ||||||||| ||||             ||||||    
T  36630816 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaa--tttggg 36630913  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  36630914 caatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctctct 36630986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 14777273 - 14777104
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||  ||||||||| ||||             |||||||    
T  14777273 gcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa--tttgggc 14777176  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  14777175 aatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatcgctct 14777104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 27954606 - 27954731
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||||| ||| ||||||| ||| |||||||||  |||||||    
T  27954606 tttaagtatcaaaaagagtacatattaacttgatcaagtatctctaaccccaaaggatagatttagctacttactttcatagtagccttgc-gaaaatgg 27954704  T
Q  192 aagaaaaaatcaagattcatgacaaga 218  Q
    ||||||| || ||||||||||||||||    
T  27954705 aagaaaagatgaagattcatgacaaga 27954731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 27951369 - 27951489
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||| ||||||||| ||||||| ||||| |||||||||| | ||||||||||| ||||| ||| ||||||| ||| ||||||||| ||||||||    
T  27951369 tttaagtatcgaaaagagtacatattaacttgatcaagtatctcttaccccaaaggatagatttagctacttactttcatagtagccttgc-aaaaatgg 27951467  T
Q  192 aagaaaaaatcaagattcatga 213  Q
    ||||||| || |||||||||||    
T  27951468 aagaaaagatgaagattcatga 27951489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 29864600 - 29864468
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||| || || |||||| |||||| ||||| ||||||  |||||||||| ||||| ||| ||||||| ||| |||||||| ||||| |||    
T  29864600 tttaagtatcaaaaggaatacatattagtttgatcaagtacctctaactccaaaggatagatttagctacttactttcatagtagccttg-aaaaagtgg 29864502  T
Q  192 aagaaaaaatcaagattcatgacaagattcatga 225  Q
    ||||||| || |||||||| |||||||| |||||    
T  29864501 aagaaaagatgaagattcaagacaagatccatga 29864468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 28958459 - 28958548
Alignment:
Q  133 ctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatggaagaaaaaatcaagattcatgacaagattcat 223  Q
    |||||| | ||||||||| ||||| ||| ||||||| ||| |||| |||||||| ||||||||||| || |||||||||||||||||||||    
T  28958459 ctctaacctcaaaggatagatttagctacttactttcatagtagctttgcaaaa-atggaagaaaatatgaagattcatgacaagattcat 28958548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 10876877 - 10876829
Alignment:
Q  243 cccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcaca 291  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  10876877 cccggcgaacccgtgtggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 20403742 - 20403620
Alignment:
Q  102 aaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatggaagaaaaaat 201  Q
    ||||||| || ||||||  ||||| ||||| |||||| |||||| || | ||||| ||| ||||||| ||| |||| |||| |||| ||||||||||  |    
T  20403742 aaaaagaatacatattagcttgatcaagtacctctaaacccaaatgagagatttagctacttactttcatattagctttgcgaaaa-tggaagaaaaggt 20403644  T
Q  202 caagattcatgacaagattcatga 225  Q
     |||||||||||||| ||||||||    
T  20403643 gaagattcatgacaatattcatga 20403620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 10868490 - 10868453
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10868490 aattttatttagcacacttttgacgggttcatctctct 10868453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 37966666 - 37966614
Alignment:
Q  230 ggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    |||| |||||||||||||||||| | || ||||||||| ||||||||||||||    
T  37966666 ggcggtttcaccgcccggcgacctcaggcggtcgtccgagctcgatcgataat 37966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 26502810 - 26502887
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||||||| ||  |||| ||||||||||||||   |||||||| ||||  ||||| ||||||||| |||||||||||    
T  26502810 ggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacacact 26502887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 26589904 - 26589827
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||||||| ||  |||| ||||||||||||||   |||||||| ||||  ||||| ||||||||| |||||||||||    
T  26589904 ggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacacact 26589827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 2413128 - 2412935
Alignment:
Q  21 ataacttggctcaatccggtatctctcacatcattagtttgtgtgtattctatatgattctatatttaatttttaagtatcaaaaagagtagatattaat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||  |||||||     
T  2413128 ataacttggctcaatccggtatctctcacatcattagtttgtgtgtattctatatgattctatatttaa-------gtatcaaaaagagttcatattaac 2413036  T
Q  121 ttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatggaagaaaaaatcaagattcatgacaagatt 220  Q
    ||||| ||| |||||||| || |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  2413035 ttgatcaagcatctctaaccctaaaggatatatttagctacttacttttataatagccttgca-aaaatggaagaaaaaacgaagattcatgacaagatt 2412937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 45418566 - 45418753
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||      
T  45418566 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaa 45418665  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45418666 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 45418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 44084787 - 44084600
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||      
T  44084787 gggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaa 44084688  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44084687 aaagaaaaa--tttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctctct 44084600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 229 - 414
Target Start/End: Original strand, 8147334 - 8147518
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||      
T  8147334 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttac-- 8147431  T
Q  329 nnnnnnnnnnntttgggcaatctg-aaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
               ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8147432 aaaaagaaaaatttgggcaatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 229 - 414
Target Start/End: Original strand, 770977 - 771165
Alignment:
Q  229 gggcgatttcaccgcccggcgacc-----ccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||| ||||||||||||||||||     ||||| ||||| ||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||    
T  770977 gggcggtttcaccgcccggcgaccggatcccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacact 771076  T
Q  324 tacnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  771077 tacaaaaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 12756985 - 12756834
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||             |||| ||||||||||||||||||||    
T  12756985 ccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa--tttgagcaatctgaaaattctcaca 12756888  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12756887 cgcaaataagtctcggaattttatttagcacactattgacgggttcatctctct 12756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 35962715 - 35962885
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||||||||| ||||             ||||||    
T  35962715 ggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaat--tttggg 35962812  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  35962813 caatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 35962885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 41251798 - 41251631
Alignment:
Q  249 gaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaa 348  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             |||||||||    
T  41251798 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttgggcaa 41251701  T
Q  349 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  41251700 tctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 41251631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 42439986 - 42440156
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||  || ||||||||| ||||||||| ||||             ||||||    
T  42439986 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 42440083  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||    
T  42440084 caatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcatgtctct 42440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 8059517 - 8059330
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||| |||||||||  | ||| || ||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||      
T  8059517 gggcggtttcaccgcccgacgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaa 8059418  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  8059417 aaagaaaaa--tttggccaatttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgggttcatttctct 8059330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 31758463 - 31758331
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    ||||||||| |||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||||| ||| ||||||| ||| |||||||||| |||||||    
T  31758463 tttaagtataaaaaagagtacatattaacttgatcaagtatctctaaccccaaaggatagatttagctatttactttcatagtagccttgca-aaaatgg 31758365  T
Q  192 aagaaaaaatcaagattcatgacaagattcatga 225  Q
    ||||||| || |||||||||||||||||||||||    
T  31758364 aagaaaagatgaagattcatgacaagattcatga 31758331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 31581789 - 31581619
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    ||||||| |||| ||||| || ||||||| ||||| |||||||| ||||||| ||  ||||||||| ||||||||| ||||             ||||||    
T  31581789 ggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 31581692  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31581691 caatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 31581619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 32127308 - 32127138
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||| || | | ||||||||  ||||||||| ||||             ||| ||    
T  32127308 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaa--tttagg 32127211  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  32127210 caatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcatgtctct 32127138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 418
Target Start/End: Original strand, 18981622 - 18981786
Alignment:
Q  252 cccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatct 351  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||||| | ||||| ||| ||||             |||||||||| |    
T  18981622 cccgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaa--tttgggcaattt 18981719  T
Q  352 gaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
     |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  18981720 aaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcatgtctct 18981786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 17445206 - 17445038
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    ||||||| |||| ||||| ||| ||||||||||||||||||||||  ||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  17445206 ggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 17445111  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  17445110 caatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 17445038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 6403970 - 6403801
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | |||||   ||||||||| |||              |||||||    
T  6403970 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta--taaaaagaaaaatttgggc 6403873  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  6403872 aatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 6403801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 16405603 - 16405770
Alignment:
Q  249 gaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaa 348  Q
    ||||| ||| ||||| |||||||| ||||||||||||||||| |||||| ||| ||||||||  ||||||||| |||              ||||| |||    
T  16405603 gaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattta--taaaaagaaaaatttggacaa 16405700  T
Q  349 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  16405701 tctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 16405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 2958267 - 2958131
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  2958267 ggcgaccccgggcggtcgtccgggctcgatcgataa-ttttgcacattagactcaacccaaaagcccattaacacatttac--aaagagaaaaatttggg 2958171  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattt 385  Q
     |||||||||||| |||||||||||||||||| |||||||    
T  2958170 taatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 2285954 - 2286032
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||| |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  2285954 tttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgacgtgttcatttctct 2286032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 40200125 - 40200005
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||||||||| ||| ||| ||||| |||||||||||| ||||||||||| ||||| ||| ||| ||  ||| |||||||||  |||||||    
T  40200125 tttaagtatcaaaaagagtacatactaacttgatcaagtatctctaaccccaaaggatagatttagctacttatttacatagtagccttgc-gaaaatgg 40200027  T
Q  192 aagaaaaaatcaagattcatga 213  Q
    ||||||| || |||||||||||    
T  40200026 aagaaaatatgaagattcatga 40200005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 26162774 - 26162699
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| |||||||||| || |||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  26162774 tttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatctctct 26162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 326
Target Start/End: Original strand, 26237953 - 26238036
Alignment:
Q  242 gcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||  ||| ||||||| | ||||||||||||||    
T  26237953 gcccggcgaccccgggcggtcgcccgggctcgatcgat-atttttgcaaattagatgcaaaccaaaagtccattaacacacttac 26238036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 34905969 - 34906028
Alignment:
Q  266 cgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||||||||||||||||||||||||  || || ||||||||| |||||||||||||    
T  34905969 cgggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacacactta 34906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 4555385 - 4555298
Alignment:
Q  238 caccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||||||||| | |||| ||||| | || ||||||||||||||||||||||| | |||||| ||||||||   |||||||||||||    
T  4555385 caccgcccggcgatctcgggcggtcg-ctggactcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttac 4555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 7072706 - 7072643
Alignment:
Q  259 ggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacac 322  Q
    ||||| ||||||||||||||||||||||  |||||| || ||| ||||||||| ||||||||||    
T  7072706 ggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacac 7072643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 26238080 - 26238113
Alignment:
Q  385 ttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||    
T  26238080 ttatttagcacactattgacgggttcatctctct 26238113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 34523223 - 34523295
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaa 301  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||||  ||||||   |||||||| |||||    
T  34523223 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaa 34523295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 4555226 - 4555189
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  4555226 aattttatttaccacactattgacgagttcatctctct 4555189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 45182964 - 45183151
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||      
T  45182964 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttac-- 45183061  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45183062 aaaaagaaaaatttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctctct 45183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 11018399 - 11018209
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 11018300  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  11018299 caaaaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctctct 11018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 6931078 - 6930891
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||      
T  6931078 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaa 6930979  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6930978 aaagaaaaa--tttaggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 6930891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 33040936 - 33041123
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| |||||  |||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||      
T  33040936 gggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttac-- 33041033  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||  |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33041034 aaaaagaaaaatttgaacaatttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33041123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 6503756 - 6503566
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacactta 6503657  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||  |||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  6503656 c--aaaaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctctct 6503566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 226 - 418
Target Start/End: Original strand, 27935158 - 27935348
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||| | |||||||||| ||| |||| |||  |||| |||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||    
T  27935158 catgggtggtttcaccgcctggcaaccctgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacactta 27935257  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27935258 caaaaagaaaaa--tttgggcaatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctctct 27935348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 19390146 - 19390316
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| | ||||| | ||||||||| ||||             ||||||    
T  19390146 ggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaa--tttggg 19390243  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  19390244 caatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 19390316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 414
Target Start/End: Complemental strand, 6269592 - 6269427
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    |||| |||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             |||||||    
T  6269592 gcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttgggc 6269495  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | |||||||    
T  6269494 aatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 22968610 - 22968441
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||| ||||             |||||||    
T  22968610 gcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttac--aaaaagaaaaatttgggc 22968513  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||| |||||| ||||||| |||||||||| | |||||||||||||||||||||||| | |||||||||||    
T  22968512 aatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 22968441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 19565685 - 19565498
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||||||| |||||| ||||| ||||| || |||||||||||||||||||||||||||| | ||||  | ||||||||| ||||      
T  19565685 gggcggtttcaccgcccggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaa 19565586  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||    
T  19565585 aaagaaaaa--tttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtaccggattcatctctct 19565498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 418
Target Start/End: Original strand, 35514255 - 35514432
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnn 334  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| | |||| |||| ||||||| | ||||||||||  |             
T  35514255 tttcaccgcccggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacacacaaa------aag 35514348  T
Q  335 nnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
         ||||| |||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  35514349 aaaaatttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctctct 35514432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 45335858 - 45336044
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||||||||| |||| ||||| |||| ||| ||||||||||||| |||||||||||||| | ||||| || |||||||| ||||      
T  45335858 gggcggtttcaccgcccggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtca-ttaacacatttacaa 45335956  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||    
T  45335957 aaagaaaaa--tctgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctctct 45336044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 34084289 - 34084119
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||||| |  ||| | ||||| | ||||||||| ||||             ||||||    
T  34084289 ggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaa--tttggg 34084192  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  34084191 caatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctctct 34084119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 39771791 - 39771960
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| |||              |||||||    
T  39771791 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta--taaaaagaaaaatttgggc 39771888  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||  |||||||||||| | |||||||||||    
T  39771889 aatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 39771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 418
Target Start/End: Complemental strand, 40081893 - 40081738
Alignment:
Q  259 ggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaatt 358  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||  ||||||||| ||||             |||||||||| ||||||||    
T  40081893 ggtcgcccgggctcgatcgataatttttgaacattagactcaa-ccaaaagctcattaacacatttacaaaaagaaaaa--tttgggcaatttgaaaatt 40081797  T
Q  359 ctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
     |||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||    
T  40081796 gtcacacgcaaatagatcttggattttt-tttagcacactattgacgggttcatctctct 40081738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 25805172 - 25805039
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatt-taactagttacttttataatagccttgcaaaaaatg 190  Q
    |||||| || |||||||||| ||||||| |||||  |||| |||||| ||||||||||| ||| || | |  |||||| ||| |||||||||||||| ||    
T  25805172 tttaaggataaaaaagagtacatattaacttgatctagtacctctaaccccaaaggatagattatagccacatactttcatagtagccttgcaaaaa-tg 25805074  T
Q  191 gaagaaaaaatcaagattcatgacaagattcatga 225  Q
    |||||||| || |||||||||||||||||||||||    
T  25805073 gaagaaaagatgaagattcatgacaagattcatga 25805039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 22922214 - 22922265
Alignment:
Q  367 caaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctctct 22922265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 6890981 - 6891035
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatt 283  Q
    ||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  6890981 gggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 5135421 - 5135458
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctctct 5135458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 5135285 - 5135349
Alignment:
Q  262 cgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||| |||||||||||| ||||||| ||||||||||||| | ||||||  ||||||||||||||    
T  5135285 cgtccaggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttac 5135349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 5354698 - 5354758
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattag 295  Q
    ||||||||||||||||||||||| ||||| ||||||||||||  |||||||  ||||||||    
T  5354698 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatccttaattttctcacattag 5354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 22922157 - 22922205
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacatta 294  Q
    ||||| |||||| |||||  |||||||||||||| ||||||||||||||    
T  22922157 ggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacatta 22922205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 31680350 - 31680537
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||      
T  31680350 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaa 31680449  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31680450 aaagaaaaa--tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 31680537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 12279044 - 12278857
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||      
T  12279044 gggcggtttcaccgcccggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaa 12278945  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12278944 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctctct 12278857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 17332735 - 17332548
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||      
T  17332735 gggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttac-- 17332638  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17332637 aaaaagaaaaatttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 17332548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 418
Target Start/End: Original strand, 37254621 - 37254811
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| ||||||||| |||||||||| || ||||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37254621 catgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacactta 37254720  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37254721 caaaaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctctct 37254811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 229 - 416
Target Start/End: Complemental strand, 31501900 - 31501715
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  31501900 gggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttac-- 31501803  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
               |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  31501802 aaaaagaaaaatttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattgatgagttcatctct 31501715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 260 - 418
Target Start/End: Original strand, 33430335 - 33430491
Alignment:
Q  260 gtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattc 359  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||             ||||||||||||||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa--tttgggcaatctgaaaattc 33430432  T
Q  360 tcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33430433 tcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33430491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 10033927 - 10034097
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||  | ||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  10033927 ggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 10034024  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  10034025 caatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 10034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 13817977 - 13818147
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  13817977 ggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 13818074  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  13818075 caatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctctct 13818147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 39657673 - 39657503
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    ||||||||| |  |||||| |||||||||| ||||||||||||||||||||| ||| ||||||||  ||||||||| ||||             ||||||    
T  39657673 ggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa--tttggg 39657576  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  39657575 caatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 39657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 36293788 - 36293618
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||| | |||||||||| |||||||||||||||||| ||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  36293788 ggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 36293691  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| || | |||||||||||    
T  36293690 caatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctctct 36293618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 16155016 - 16155167
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||              ||| ||||||||||||||| |||||    
T  16155016 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta--taaaaagaaaaatttaggcaatctgaaaattgtcaca 16155113  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  16155114 cgcaaataggtcttggaattttatttagcacactattgacagattcatctctct 16155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 39434696 - 39434866
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||| ||| ||||| |||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  39434696 ggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaa--tttggg 39434793  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  39434794 caatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctctct 39434866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 36291354 - 36291541
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||| |||| ||||| ||||||||||| |||||| ||||||||||||||||||| | || | |||||   ||||||||| ||||      
T  36291354 gggcggtttcaccgcccgccgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaa 36291453  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||| |||||| | |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  36291454 aaagaaaaa--tttgggcaatctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctctct 36291541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 418
Target Start/End: Original strand, 43068894 - 43069047
Alignment:
Q  263 gtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctca 362  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||| ||||             ||||||||||||||||||||| |    
T  43068894 gtccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaa--tttgggcaatctgaaaattctta 43068991  T
Q  363 cacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    || | ||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  43068992 catgtaaataagtctcggaattttatttagcacactattgccggattcatctctct 43069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 418
Target Start/End: Complemental strand, 16334013 - 16333873
Alignment:
Q  276 cgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggt 375  Q
    |||||||||||||||||||||  ||| ||||||||| ||||||||| ||||             ||||||||||||||||||| ||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttac--aaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggt 16333916  T
Q  376 ctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    || |||||||||||||||||||||||||||| ||||| |||||    
T  16333915 cttggaattttatttagcacactattgacggattcatgtctct 16333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 26283484 - 26283315
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||| | |||||   ||||||||| |||              |||||||    
T  26283484 gcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta--taaaaagaaaaatttgggc 26283387  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  26283386 aatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26283315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 1776541 - 1776377
Alignment:
Q  248 cgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggca 347  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||| |  ||| | ||||| | ||||||||| ||||             ||||||||    
T  1776541 cgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaa--tttgggca 1776444  T
Q  348 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
    || |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  1776443 atttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 415
Target Start/End: Original strand, 19985941 - 19986106
Alignment:
Q  248 cgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggca 347  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||  ||| ||||||| | |||| |||| ||||             |||||| |    
T  19985941 cgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaa--tttgggta 19986038  T
Q  348 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 415  Q
    |||| |||||| |||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  19986039 atctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 28801298 - 28801367
Alignment:
Q  257 gtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||| || ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  28801298 gtggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttac 28801367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 3155706 - 3155647
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacta 399  Q
    ||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  3155706 tttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 202622 - 202716
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||| |||||||||||| ||||||  |||||||| |||||||||||||||||||| || |||||||  | || ||||||||| ||||| |||||    
T  202622 gggcggtttcaccgcccgacgaccctaggtggtcgcccgggctcgatcgataatttgtgtacattaggtcgaacccaaaagcccattaagacact 202716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 26543949 - 26543877
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaa 301  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||||  ||||||   |||||||| |||||    
T  26543949 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaa 26543877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 3155798 - 3155719
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    ||||| |||||| |||||  ||||||||||| |||||||||||||||| ||| ||| | ||||| | ||||||||| |||    
T  3155798 ggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta 3155719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 28801439 - 28801476
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  28801439 aattttatttagctcactattgacaggttcatctctct 28801476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 28996713 - 28996900
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| | ||||| ||||||||||||||||      
T  28996713 gggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaa 28996812  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28996813 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 28996900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 18339106 - 18339276
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||             ||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaat--tttggg 18339203  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18339204 caatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 18339276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 14354885 - 14355017
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||||| ||| ||||||| ||| ||||||||| ||||||||    
T  14354885 tttaagtatcaaaaagagtacatattaacttgatcaagtatctctaaccccaaaggatagatttagctacttactttcatagtagccttgc-aaaaatgg 14354983  T
Q  192 aagaaaaaatcaagattcatgacaagattcatga 225  Q
    ||||||| || ||||||| |||||||||||||||    
T  14354984 aagaaaagatgaagattcgtgacaagattcatga 14355017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 29743266 - 29743453
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||| ||| ||| |||||| ||| | |||||||| |||||||||||||||||||||||||||| | |||||   ||||||||| ||||      
T  29743266 gggcggtttcaccgtccgacgatcccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacag 29743365  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  29743366 aaagaaaaa--tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctctct 29743453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 34948925 - 34948755
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    ||||||||| || ||||| || |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  34948925 ggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 34948828  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||| ||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  34948827 caatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcatgtctct 34948755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 13837821 - 13837991
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| | |||  |||| ||||||||||||||||| ||||||||| ||| ||||||||  || |||||| ||||             ||||||    
T  13837821 ggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaa--tttggg 13837918  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  13837919 caatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 13837991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 398618 - 398787
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  398618 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta--taaaaagaaaaatttgggc 398715  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  398716 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 398787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 33229484 - 33229333
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||| | ||||||||| || |             ||||||||||||||||||||| |||    
T  33229484 ccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaa--tttgggcaatctgaaaattcttaca 33229387  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    || ||||| ||||||| ||||||||||||||||||||| ||| |||||||||||    
T  33229386 cgtaaataagtctcgggattttatttagcacactattgccggattcatctctct 33229333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 24698000 - 24697904
Alignment:
Q  230 ggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    |||| ||||||||||||||||||||||    ||| |||||||| ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  24698000 ggcggtttcaccgcccggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttac 24697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 31028542 - 31028451
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||||||| |||| | ||||||  ||||||||| ||||    
T  31028542 tttcaccgcccggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttac 31028451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 13647000 - 13647053
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  13647000 gggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 34385572 - 34385519
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    ||||| ||||||||||||||||||||||| ||| | || |||||||||||||||    
T  34385572 gggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatcgataat 34385519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 24072576 - 24072625
Alignment:
Q  274 atcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||||||||||||||||||||| | || |||||| || |||||||||||    
T  24072576 atcgataatttttgcacattagatcgaacccaaaaacccattaacacact 24072625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 3293080 - 3292893
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||      
T  3293080 gggcggtttcaccgcccagtgaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaa 3292981  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3292980 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 3292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 6690419 - 6690232
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||      
T  6690419 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttac-- 6690322  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  6690321 aaaaagaaaaatttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctctct 6690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 43143771 - 43143581
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 43143672  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43143671 c--aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 43143581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 236 - 418
Target Start/End: Complemental strand, 30216919 - 30216739
Alignment:
Q  236 ttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnn 335  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||             
T  30216919 ttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaa 30216820  T
Q  336 nnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
        ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30216819 aa--tttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctctct 30216739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 50205261 - 50205074
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||| ||||||| |||||| ||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||      
T  50205261 gggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaa 50205162  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
                |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  50205161 aaagaaaaaa--ttggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatcactct 50205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 42333963 - 42333773
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    ||||| || |||||||| || |||| |||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  42333963 catggacggtttcaccgtccagcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 42333864  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||    
T  42333863 c--aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgataagttcatctctct 42333773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 235 - 418
Target Start/End: Original strand, 48989317 - 48989498
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnn 334  Q
    |||||||||||| |||| ||||| ||||  ||||| |||||||||||||||||||||||| ||||||  |||||| | ||||||||||||||            
T  48989317 tttcaccgcccgacgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaa 48989416  T
Q  335 nnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48989417 aaa--tttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 48989498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 44156670 - 44156821
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||             ||||| |||||||||||||||| ||    
T  44156670 ccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaat--tttggacaatctgaaaattctctca 44156767  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44156768 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 44156821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 10353068 - 10352881
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||| | ||||| | ||||||||| ||||      
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaa 10352969  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||| |||||||||||    
T  10352968 aaggaaaaa--tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctctct 10352881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 25930708 - 25930878
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||| ||| ||||| |||||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||| ||||             ||||||    
T  25930708 ggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttggg 25930805  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25930806 caatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 25930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 35545977 - 35546123
Alignment:
Q  270 ctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaa 369  Q
    ||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||             ||||||||||||||||||||||||||||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaat--tttgggcaatctgaaaattctcacacgcaa 35546074  T
Q  370 ataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    || |||||| |||||||||||||||||||||||| ||||||||||||||    
T  35546075 atgggtctctgaattttatttagcacactattgatgggttcatctctct 35546123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 36382512 - 36382343
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||| || ||| | ||||| | ||||||||| ||||             |||||     
T  36382512 ggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaagaaaaa---tttgga 36382416  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36382415 caatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 36382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 20129311 - 20129480
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             |||||||    
T  20129311 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttac--aaaaagaaaaatttgggc 20129408  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||| ||||||||||||| | |||||||||||    
T  20129409 aatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctctct 20129480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 416
Target Start/End: Original strand, 26448036 - 26448220
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||| ||| | | |||||||| ||||||||||||||||||||||||| | | || ||||||| | ||||||||||||||      
T  26448036 gggcggtttcaccgcccggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaa 26448135  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
               ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||| || ||||||    
T  26448136 aaaaaaaa---tttgggcaatctgaaaattctcatacacaaataggtttcggaattttatttagcacactattggcggatttatctct 26448220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 416
Target Start/End: Complemental strand, 29996167 - 29995982
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||| ||| |||||  |||||||||| |||||||||||||||||| ||||||||| ||| | ||||| | ||||||||| ||||      
T  29996167 gggcggtttcaccgcccgacgatcccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacga 29996068  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
               |||||||||||||||||||||  ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  29996067 aaagaaaaa--tttgggcaatctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctct 29995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 9417409 - 9417541
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||| || |||||||| ||||| ||||||||||| |||  |||||||| ||||||||    
T  9417409 tttaagtatcaaaaagagtacatattaacttgataaagtatctctaaccctaaaggatagatttagctagttactttcatagcagccttgc-aaaaatgg 9417507  T
Q  192 aagaaaaaatcaagattcatgacaagattcatga 225  Q
    ||| ||| || ||||||||||| |||||||||||    
T  9417508 aaggaaagatgaagattcatgaaaagattcatga 9417541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 418
Target Start/End: Complemental strand, 29319869 - 29319702
Alignment:
Q  249 gaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaa 348  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||| ||| |||||| || ||||||||| ||||             |||| ||||    
T  29319869 gacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaa--tttgagcaa 29319772  T
Q  349 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  29319771 tctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 29319702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 6235612 - 6235690
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6235612 tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 6235690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 28877434 - 28877247
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||| |||  ||||||| | |||||   ||||| ||||||||||||||||||||||||  ||| | |||||| ||||||||| ||||       
T  28877434 gggcggtttcaccgtccgatgaccccgtgcggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgctta--t 28877337  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28877336 aaaaagaaaaatttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctctct 28877247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 26439445 - 26439276
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| |||              |||||||    
T  26439445 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta--taaaaagaaaaatttgggc 26439348  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||  |||||||||||| | |||||||||||    
T  26439347 aatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 26439276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 34407450 - 34407281
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| |||              |||||||    
T  34407450 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta--taaaaagaaaaatttgggc 34407353  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||  |||||||||||| | |||||||||||    
T  34407352 aatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 34407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 47500774 - 47500943
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  47500774 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta--tgaaaagaaaaatttgggc 47500871  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  47500872 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 47500943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 13012189 - 13012358
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||  ||| | ||||||  ||||||||| |||              |||||||    
T  13012189 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacattta--taaaaagaaaaatttgggc 13012286  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  13012287 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 13012358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 1817809 - 1817887
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  1817809 tttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacactattgtcggattcatctctct 1817887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 13392956 - 13392878
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||||    
T  13392956 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13392878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 13396095 - 13396017
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||||    
T  13396095 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13396017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 30109942 - 30110036
Alignment:
Q  232 cgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||||||||||| |||||||||  ||||| |||| |||||||||||||||||||||||||||||||| || |||| | ||||||||||||||    
T  30109942 cgatttcaccgcccgacgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttac 30110036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 43355905 - 43356074
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    |||||||| ||  |||| ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| |||              |||||||    
T  43355905 gcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta--taaaaagaaaaatttgggc 43356002  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||  |||||||||||| | |||||||||||    
T  43356003 aatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 43356074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 418
Target Start/End: Original strand, 40529028 - 40529185
Alignment:
Q  259 ggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaatt 358  Q
    |||||||||| ||||||||||||||||||||||||| || ||| | |||| |  ||||||||| ||||             ||||| |||| ||||||||    
T  40529028 ggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaa--tttggacaatttgaaaatt 40529125  T
Q  359 ctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
     ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  40529126 gtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcatatctct 40529185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 17511377 - 17511230
Alignment:
Q  270 ctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaa 369  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             |||||||||| |||||||| | ||||||||    
T  17511377 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa--tttgggcaatttgaaaattgttacacgcaa 17511280  T
Q  370 ataggtctcgg-aattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||| || |||||||||||||||| ||||||  |||||||||||||    
T  17511279 ataggtcttggaaattttatttagcacattattgatcggttcatctctct 17511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 48129950 - 48130046
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| ||| |||||||||||||| |||    ||| ||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  48129950 catgggcggtttaaccgcccggcgacctcgg----tcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacactta 48130045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 30077814 - 30077628
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||||||||| ||||| |||| ||||| || ||||| |||||||| ||||||||||||||||||| | |||||   ||||||||| ||||      
T  30077814 gggcggtttcaccgcccg-cgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaa 30077716  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| ||||||||||||| | |||| ||||||||||| | ||||||||||||||||||| || ||| |||||||||||    
T  30077715 aaagaaaaa--tttggacaatctgaaaatttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctctct 30077628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 49908836 - 49908782
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatt 283  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  49908836 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 6254569 - 6254622
Alignment:
Q  271 tcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactt 324  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacactt 6254622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 7769308 - 7769369
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttg 287  Q
    |||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 27363361 - 27363441
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||| |||| ||||| ||||||||||||||   |||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  27363361 ggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttac 27363441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 45194165 - 45194256
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    |||||||||||| ||||||| || | | | |||| ||||||| ||||||||||||||||| || ||| ||||||| | ||||||||||||||    
T  45194165 tttcaccgcccgacgaccccaggcgattgcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttac 45194256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 5517548 - 5517494
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatt 283  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  5517548 gggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

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Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 17554979 - 17555032
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  17554979 gggcggtttcaccgtccgacgaccccgggtggtcgcccgggctcgatcgataat 17555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 30110108 - 30110145
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctctct 30110145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 48130111 - 48130148
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctctct 48130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 6212082 - 6212029
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    ||||| |||||||| ||||||||| |||| ||||| ||| ||||||||||||||    
T  6212082 gggcggtttcaccgtccggcgacctcgggcggtcgcccgagctcgatcgataat 6212029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 13393054 - 13392989
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacatta 294  Q
    ||||| ||||||||||| ||||||||||  ||||| |||||||| |||||| | ||||||| ||||    
T  13393054 gggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13392989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 13396193 - 13396128
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacatta 294  Q
    ||||| ||||||||||| ||||||||||  ||||| |||||||| |||||| | ||||||| ||||    
T  13396193 gggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13396128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 50720529 - 50720476
Alignment:
Q  230 ggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatt 283  Q
    |||| |||||||||||||||||| |||| ||||| |||||||| ||| ||||||    
T  50720529 ggcggtttcaccgcccggcgacctcgggcggtcgcccgggctcaatcaataatt 50720476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 23402091 - 23402278
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||      
T  23402091 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttac-- 23402188  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23402189 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctctct 23402278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 242 - 418
Target Start/End: Complemental strand, 16788196 - 16788022
Alignment:
Q  242 gcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntt 341  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||             ||    
T  16788196 gcccggcaaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaa--tt 16788099  T
Q  342 tgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16788098 tgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 16788022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 226 - 418
Target Start/End: Original strand, 4403988 - 4404178
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    ||||| || |||||| | ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  4403988 catggacggtttcactggccggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatactta 4404087  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  4404088 caaaaagaaaaa--tttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 4404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 34137012 - 34136822
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||| | |||||||| | |||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacactta 34136913  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  34136912 caaaaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctctct 34136822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 21692356 - 21692224
Alignment:
Q  92 tttaagtatcaaaaagagtagatattaatttgattaagtatctctaatcccaaaggatatatttaactagttacttttataatagccttgcaaaaaatgg 191  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||||| ||| ||||||| ||| |||||||||| |||||||    
T  21692356 tttaagtatcaaaaagagtacatattaacttgatcaagtatctctaaccccaaaggatagatttagctacttactttcatagtagccttgca-aaaatgg 21692258  T
Q  192 aagaaaaaatcaagattcatgacaagattcatga 225  Q
    ||||||| || |||||||||||||||||||||||    
T  21692257 aagaaaagatgaagattcatgacaagattcatga 21692224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 2729380 - 2729193
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||       
T  2729380 gggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacactta--t 2729283  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||| |||||| |||||| ||||| |||||||||||||||  ||||||||||||||||||||||| || |||||||||||    
T  2729282 aaaaagaaattttttggcaatttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattgatggattcatctctct 2729193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 418
Target Start/End: Original strand, 36408540 - 36408721
Alignment:
Q  235 tttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnn 334  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||            
T  36408540 tttcaccgcccggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttac--aaaaag 36408637  T
Q  335 nnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
         ||| |||||| |||||||||| |||||| |||||||||| |||||||||||| |||||||||| ||| |||||||||||    
T  36408638 aaaatttttggcaatttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctctct 36408721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 260 - 416
Target Start/End: Complemental strand, 3648947 - 3648793
Alignment:
Q  260 gtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattc 359  Q
    |||| |||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| ||||             |||||||||||||||||||     
T  3648947 gtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaat--tttgggcaatctgaaaattg 3648850  T
Q  360 tcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  3648849 tcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctct 3648793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 29728553 - 29728383
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||||||  ||||||||| ||||             ||||||    
T  29728553 ggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa--tttggg 29728456  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  29728455 caatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctctct 29728383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 246 - 412
Target Start/End: Original strand, 15838286 - 15838449
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||  ||||||||||| |||||||||||||||||| || ||| | ||||| | ||||||||| ||||             ||||||    
T  15838286 ggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaagaaaaa---tttggg 15838382  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcat 412  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15838383 caatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 418
Target Start/End: Original strand, 9877242 - 9877390
Alignment:
Q  268 ggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgc 367  Q
    |||||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||             ||||||||||||||||||||||||| ||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaa--tttgggcaatctgaaaattctcacatgc 9877339  T
Q  368 aaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||||||| |||||||||||||||||||||| |   |||||||||||    
T  9877340 aaataggtctcgaaattttatttagcacactattgtcaaattcatctctct 9877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 39914516 - 39914684
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  39914516 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta---taaaaaaaaaatttgggc 39914612  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||| | |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  39914613 aatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 39914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 42231029 - 42231105
Alignment:
Q  340 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctct 416  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  42231029 tttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctct 42231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 3435288 - 3435349
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  3435288 ccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttac 3435349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 40470637 - 40470581
Alignment:
Q  269 gctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||||||||||||||||||||||||||||  |||||| | |||||||||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacactta 40470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 40470509 - 40470472
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctctct 40470472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 10397215 - 10397132
Alignment:
Q  238 caccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacaca 321  Q
    |||||||||||||| |||||   ||| |||||||| ||||||||||| | ||||||||   ||| ||||||||| |||||||||    
T  10397215 caccgcccggcgactccgggcactcgcccgggctcaatcgataatttcttcacattaggttcaacccaaaagccgattaacaca 10397132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 5230 - 5400
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||             ||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaat--tttggg 5327  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5328 caatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 5400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 226 - 418
Target Start/End: Original strand, 35907532 - 35907722
Alignment:
Q  226 catgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacactta 325  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  35907532 catgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacactta 35907631  T
Q  326 cnnnnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  35907632 c--aaaaagaaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctctct 35907722  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 414
Target Start/End: Original strand, 17445296 - 17445479
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| |||||  |||||||||||||  | ||||| ||||||| |||| |||||||||| |||||||| |||| ||||||| ||||||||||||||||      
T  17445296 gggcggtttcattgcccggcgaccccatgcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaa 17445395  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 414  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17445396 aaagaaaaa--tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 321561 - 321374
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||||| ||||||||   |||| |||||||||||||||||||||||||||||  ||||||| |||| ||||||| | ||||||||| ||||      
T  321561 gggcggtttcaccacccggcgatttcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaa 321462  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  321461 aaagaaaaa--tttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctctct 321374  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 3828967 - 3829153
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||| | |||||| |||||||  |||||  |||| |||||||||||||||||||||||| |||||| |||||||   ||||||||||||||      
T  3828967 gggcggtttcatcacccggcaaccccggacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaa 3829066  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3829067 aaagaaaaa--tttgggcaatctgaaaattttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctctct 3829153  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 7433449 - 7433615
Alignment:
Q  250 accccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaat 349  Q
    |||||||| ||||| ||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||||||    
T  7433449 accccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaat--tttgggcaat 7433546  T
Q  350 ctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    || |||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  7433547 ctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcatgtctct 7433615  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 42311089 - 42310938
Alignment:
Q  265 ccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctcaca 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||  |||||||| ||||             ||||||||||||||||||| |||||    
T  42311089 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaa--tttgggcaatctgaaaattgtcaca 42310992  T
Q  365 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    |||||||| |||| | |||||||||||| || ||||||||||||||||||||||    
T  42310991 cgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctctct 42310938  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 26144256 - 26144425
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  26144256 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta--taaaaagaaaaatttgggc 26144353  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  26144354 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26144425  T

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Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 32982223 - 32982053
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||||| |||||  ||||| |||||||||||||||||||||||||||||| | ||||||| ||||||| | ||||             |||||     
T  32982223 ggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaa--tttgga 32982126  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||    
T  32982125 caatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctctct 32982053  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 41972458 - 41972362
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||| || ||||| || ||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcg-cctggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttac 41972362  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 33489670 - 33489767
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttac 326  Q
    ||||| ||||||| ||||||||||||||  |||||| |||| | | ||||||||||||| ||||||||| ||| | ||||||| ||||||||||||||    
T  33489670 gggcggtttcaccacccggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacacttac 33489767  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 33489839 - 33489876
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctctct 33489876  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 41972290 - 41972253
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctctct 41972253  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 44352677 - 44352614
Alignment:
Q  219 ttcatgacatgggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataat 282  Q
    ||||| ||| ||||| |||||||  |||||||||||||| ||||| ||||||||||||||||||    
T  44352677 ttcataacaggggcggtttcaccatccggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 31866960 - 31867014
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatt 283  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| |||| ||||||||    
T  31866960 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggttcgaccgataatt 31867014  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 35951497 - 35951435
Alignment:
Q  261 tcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacact 323  Q
    ||||||||||||||||||||||||||| |||||||  | || |||| |||| |||||||||||    
T  35951497 tcgtccgggctcgatcgataatttttgtacattaggtcgaacccaatagcccattaacacact 35951435  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 48901288 - 48901207
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagcc 311  Q
    ||||| || ||||||||||| || ||||| ||| | ||||| |||||||||||||| |||||||||| ||||| |||||||||    
T  48901288 gggcggttccaccgcccggcaactccgggcggtgg-ccggggtcgatcgataatttatgcacattaggcccaacccaaaagcc 48901207  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 28463231 - 28463268
Alignment:
Q  381 aattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  28463231 aattttatttagcacactattggtgggttcatctctct 28463268  T

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Target: scaffold0154 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 418
Target Start/End: Original strand, 31463 - 31650
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnn 328  Q
    ||||| ||||| |||||||||||||| |  ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||      
T  31463 gggcggtttcatcgcccggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttac-- 31560  T
Q  329 nnnnnnnnnnntttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
               ||||| |||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||| |||||||||||||    
T  31561 aaaaagaaaaatttggacaatctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctctct 31650  T

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Target: scaffold0041 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 418
Target Start/End: Original strand, 52941 - 53095
Alignment:
Q  262 cgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggcaatctgaaaattctc 361  Q
    |||||||||||||||||||||||||||||||||||   || ||||||||||||||||||| ||||             ||||| ||||||||||||||||    
T  52941 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaa--tttggacaatctgaaaattctc 53038  T
Q  362 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53039 acatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 53095  T

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Target: scaffold0069 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 17842 - 18012
Alignment:
Q  246 ggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttggg 345  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||             ||||||    
T  17842 ggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttac--aaaaagaaaaatttggg 17939  T
Q  346 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||||||||||||| ||||| | |||||||||| | |||||||||||||||||||||||| | |||||||||||    
T  17940 caatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 18012  T

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Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 480623 - 480454
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  480623 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta--taaaaagaaaaatttgggc 480526  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  480525 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 480454  T

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Target: scaffold2142 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 523 - 692
Alignment:
Q  247 gcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaatccaaaagccaattaacacacttacnnnnnnnnnnnnntttgggc 346  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||  ||||||||| |||              |||||||    
T  523 gcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta--taaaaagaaaaatttgggc 620  T
Q  347 aatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 418  Q
    ||| |||||||| ||||||| |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  621 aatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 1260 - 1332
Alignment:
Q  229 gggcgatttcaccgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaa 301  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||||  ||||||   |||||||| |||||    
T  1260 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaa 1332  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 194021 - 194083
Alignment:
Q  239 accgcccggcgaccccgggtggtcgtccgggctcgatcgataatttttgcacattagacccaa 301  Q
    ||||||||||||||||||| ||||| ||||||||||||  ||||||   |||||||| |||||    
T  194021 accgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaa 194083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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