View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_44 (Length: 426)
Name: NF11538_low_44
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 43815464 - 43815059
Alignment:
| Q |
1 |
ccttagaagttaaaggataatcagaagatttccaaagcccacgcttgacatagccatcactattcggaatcctcctgaacacagccaaagcaagagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43815464 |
ccttagaagttaaaggataatcagaacatttccaaagctcactcttcacatatccatcactcatcggaatcttcctgaacacagccaaagcaagagcaat |
43815365 |
T |
|
| Q |
101 |
agcaagatcagcaacatcatcagtcaatacattcggcgtattcgtaacccaaattcctttctctctgcaattcttcagatcaattttatcaaatccaacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43815364 |
agcaagatcagcaacatcatcagtcaacacatccggcgtattcgtaacacaaatccctttctccctgcatttcttcagatcaattttatcaaatccaaca |
43815265 |
T |
|
| Q |
201 |
ctgtaagtagacacaatctcaagattaggaagagaatcgattgtgtttgcgtcggctccgattttggtgctgcaaaccaatgcgcgaatggaatttgcgt |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
43815264 |
ctgtaagtagaaacaatctcaagattaggaagagaatcgattgtatttgcatccgctccgattttggtgttgcaaaccaatgcacgaattgaatttgcgt |
43815165 |
T |
|
| Q |
301 |
gggtttcagacaaggattggaaggaaggatagttccagagtttgaagaggttgaaacggttggaattggaaagttgttcttcgaggtttgtgttcattgg |
400 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
43815164 |
gggtttctgagaaggattggaaggaaggatagttccagagtttgaagaggttgaaacggt------tggagagttgttcttcgaggtttgtgttcattgg |
43815071 |
T |
|
| Q |
401 |
atatgtcattag |
412 |
Q |
| |
|
||||||||||| |
|
|
| T |
43815070 |
gtatgtcattag |
43815059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 46467648 - 46467753
Alignment:
| Q |
28 |
atttccaaagcccacgcttgacatagccatcactattcggaatcctcctgaacacagccaaagcaagag------caatagcaagatcagcaacatcatc |
121 |
Q |
| |
|
||||| |||| |||| ||||||||| |||||||| || |||||| ||| |||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
46467648 |
atttctaaaggccactcttgacatacccatcactcttaggaatcttccagaacacagccaaagcaagagaaagaacaagagtaagatcagcaacatcatc |
46467747 |
T |
|
| Q |
122 |
agtcaa |
127 |
Q |
| |
|
|||||| |
|
|
| T |
46467748 |
agtcaa |
46467753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 3521391 - 3521457
Alignment:
| Q |
97 |
caatagcaagatcagcaacatcatcagtcaatacattcggcgtattcgtaacccaaattcctttctc |
163 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||| || |||||||| || ||||| |||||||| |
|
|
| T |
3521391 |
caatagctaaatcagcaacatcatcagtcaacacatcaggtgtattcgtcacacaaatccctttctc |
3521457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University