View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_46 (Length: 422)
Name: NF11538_low_46
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 30911088 - 30911478
Alignment:
| Q |
18 |
attgagtatatcattagtgttgcctctacaaaggcattgtagaagtagtatgtttctttggatgtatgtaggttactaatgaaagagtaaagtttttatg |
117 |
Q |
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| T |
30911088 |
attgagtatatcattagtgttgcctctacaaaggcagtgtagaagtagtatgtttctttggatgtatgtaggttactaatgaaagagtaaagtttttatg |
30911187 |
T |
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| Q |
118 |
acttttgtttatacttatgaattgtgactgattctgcatgtttgtggaagaacttaggttcttaatagtttgtagaattatatttaccttaatttactaa |
217 |
Q |
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| T |
30911188 |
acttttgtttatacttatgaattgtgactgattgtgcatgtttgtggaagaacttaggttcttaatagtttgtagaattatatttaccttaatttactaa |
30911287 |
T |
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| Q |
218 |
atgaaatgtagtactgatggaaaacaggatttaaggttttgcaattgctttgatttcatatatttatca-ttactaatgcagaatcattctcaatgttgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30911288 |
atgaaatgtagtactgatggaaaacaggatttaaggttttgcaattgctttgatttcatatatttatcatttactaatgcagaatcattctcaatgttgc |
30911387 |
T |
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| Q |
317 |
actgcatgtttgctagggcttaggactaaagaaatgctagaagtacaatatatatgatcttaattcttatggatctcagatgtctacatct |
407 |
Q |
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| T |
30911388 |
actgcatgtttgctagggcttaggactaaagaaatgctagaagtacaatatatatgatcttaattcttaaggatctcagatgtctacatct |
30911478 |
T |
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