View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_48 (Length: 419)
Name: NF11538_low_48
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_48 |
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| [»] scaffold0182 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 48024937 - 48024550
Alignment:
| Q |
23 |
cgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatcattgtagaatcggaaacgaagtgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
48024937 |
cgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatcattatagaatcggaaacgaagtgt |
48024838 |
T |
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| Q |
123 |
ggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48024837 |
ggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttgg |
48024738 |
T |
|
| Q |
223 |
cgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagagaagcggcggcggtagcgttgtcac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
48024737 |
cgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagagaagccgcggcggtagcgttctcac |
48024638 |
T |
|
| Q |
323 |
gagctttggatatttggtcaactaatggtaatggaagaaagtaattaaaatccccgcgggaaagttacaatctcaacatggttcatct |
410 |
Q |
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| T |
48024637 |
gagctttggatatttggtcaactaatggtaatggaagaaagtaattaaaatccccgcgggaaagttacaatctcaacatggttcatct |
48024550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 274
Target Start/End: Complemental strand, 48020119 - 48019900
Alignment:
| Q |
55 |
agaaccccttttgctttaagtgaaacgacaaaccgttcatcatcattgtagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgc |
154 |
Q |
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|||||| | |||||||| | ||||| ||| |||||||||| ||| ||||||||| | ||||| | || ||||||||||||||||| || | |||| |
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| T |
48020119 |
agaaccgcctttgctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgc |
48020020 |
T |
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| Q |
155 |
cgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctt |
254 |
Q |
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||||||||||| | || |||||| |||| ||||| |||||||||||||| ||||||| ||||| || ||| || || ||||||| |||||| ||||| |
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| T |
48020019 |
cgtcgaagaagagattatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacacggtgataagaatctgcgtttgggagacgaagctt |
48019920 |
T |
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| Q |
255 |
tacttccacttccatttcgg |
274 |
Q |
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||||| || ||||| |||| |
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| T |
48019919 |
gacttcaacctccatatcgg |
48019900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 51934541 - 51934213
Alignment:
| Q |
23 |
cgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatcattgtagaatcggaaacgaagtgt |
122 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||| |
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| T |
51934541 |
cgtcttcctctacacaacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatcattatagaatcaaaaacgaaatgt |
51934442 |
T |
|
| Q |
123 |
ggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934441 |
ggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttgg |
51934342 |
T |
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| Q |
223 |
cgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagagaagcggcggcggtagcgttgtcac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
51934341 |
cgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcagtgcgattaaactgacagaggagagaagtggcggcggtagcgttgtcac |
51934242 |
T |
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| Q |
323 |
gagctttggatatttggtcaactaatggt |
351 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
51934241 |
gagctttggatatttggtcaactcatggt |
51934213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 13711 - 13514
Alignment:
| Q |
23 |
cgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatcattgtagaatcggaaacgaagtgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |
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| T |
13711 |
cgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatcattgtagaatcgaaaacgaaatgt |
13612 |
T |
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| Q |
123 |
ggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgactt |
220 |
Q |
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| T |
13611 |
ggctcgacgagaagagagttcggaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgactt |
13514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 13517 - 13422
Alignment:
| Q |
256 |
acttccacttccatttcggtgcgattaaactgacggaggagagaagcggcggcggtagcgttgtcacgagctttggatatttggtcaactaatggt |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13517 |
acttccacttccatttcggtgcgattaaactgacagaggagagaaacggcggcggtagcgttgtcacgagctttggatatttggtcaactcatggt |
13422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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