View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_53 (Length: 391)
Name: NF11538_low_53
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 159 - 375
Target Start/End: Original strand, 8394409 - 8394627
Alignment:
| Q |
159 |
taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaataccttca |
258 |
Q |
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| T |
8394409 |
taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaacaccttca |
8394508 |
T |
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| Q |
259 |
aataatat--atatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcc |
356 |
Q |
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| T |
8394509 |
aataatatatatatcatgtcttcaatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcc |
8394608 |
T |
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| Q |
357 |
caaaactcacaaatatttc |
375 |
Q |
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| T |
8394609 |
caaaactcacaaatatttc |
8394627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 8394273 - 8394366
Alignment:
| Q |
11 |
cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct |
104 |
Q |
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| T |
8394273 |
cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct |
8394366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 8412934 - 8412822
Alignment:
| Q |
263 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
362 |
Q |
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| T |
8412934 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8412835 |
T |
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| Q |
363 |
tcacaaatatttc |
375 |
Q |
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| T |
8412834 |
tcacaaatatttc |
8412822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 8435032 - 8434920
Alignment:
| Q |
263 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
362 |
Q |
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|||||||||||| ||| ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
8435032 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8434933 |
T |
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| Q |
363 |
tcacaaatatttc |
375 |
Q |
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| T |
8434932 |
tcacaaatatttc |
8434920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 375
Target Start/End: Complemental strand, 8431914 - 8431824
Alignment:
| Q |
282 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttc |
375 |
Q |
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||||||||||||||||| ||||||||||||| || |||||||| |||||||| |||||| |||| |||| ||||||||| |||||||||| |
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| T |
8431914 |
tacaaacttcagttctaacttcttgttcttta---tcatcttcaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttc |
8431824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 375
Target Start/End: Complemental strand, 8406833 - 8406743
Alignment:
| Q |
282 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttc |
375 |
Q |
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||||||||||||||||| ||||||||||||| || |||||||| |||||||| || ||| |||| |||| ||||||||| |||||||||| |
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| T |
8406833 |
tacaaacttcagttctaacttcttgttcttta---tcatcttcaaagagagtaattaacgctgcaattaatcttccaaaactcccaaatatttc |
8406743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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