View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_59 (Length: 370)
Name: NF11538_low_59
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 47899414 - 47899747
Alignment:
| Q |
19 |
aaggcaagaaaaacaaccagttaccatgaagcatgaacttaccaagtaggatggcaggtactaaggtctgtaataacagtgacaaaaataactttctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47899414 |
aaggcaagaaaaacaaccagttaccatgaagcatgaacttaccaagtaggatggcaggtactaaggtctgtaataacagtgacaaaaataactttctttt |
47899513 |
T |
|
| Q |
119 |
ccaaaccttgccacttcaaaacccatagtggaatatgttgcatcatgggatggacgctgattataatatctggcttgtattccatcaaccctgcctccac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47899514 |
ccaaaccttgccacttcaaaacccatagtggaatatgttgcatcatgggatggacgctgattataatatctggcttgtattccatcaaccctgcctccac |
47899613 |
T |
|
| Q |
219 |
ctctctgaaaattacagtacaatgacagtttgtcaatcagaaaacaccacttatgattacataaacataaaatgtctaattaagtcaacaatagatgttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47899614 |
ctctctgaaaattacagtacaatgacagtttgtcaatcagaaaacaccacttatgattacataaacataaaatgtctaattaagtcaacaatagatgttc |
47899713 |
T |
|
| Q |
319 |
cagcatatcatgttactcatatacacatgacatc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47899714 |
cagcatatcatgttactcatatacacatgacatc |
47899747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University