View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_6 (Length: 798)
Name: NF11538_low_6
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 137 - 791
Target Start/End: Complemental strand, 39167757 - 39167103
Alignment:
| Q |
137 |
ctggaggcattttttgtgtttgcagattattgccgctgccagagatgtccaggaaaacctggagatttatgcacattcatataatattcttcctctagat |
236 |
Q |
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| T |
39167757 |
ctggaggcattttttgtgtttgcagattattgccgctgccagagatgtccaggaaaacctggagatttatgcacattcatataatattcttcctctagat |
39167658 |
T |
|
| Q |
237 |
gctgctggtgcttctctgcccattatgcagtttgaagaggtgtttttgagtgactaatgttaaatccttgcgtttctttaaccggacatagtatgagttt |
336 |
Q |
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| T |
39167657 |
gctgctggtgcttctctgcccattatgcagtttgaagaggtgtttttgagtgactaatgttaaatccttgcgtttctttaactggacatagtatgagttt |
39167558 |
T |
|
| Q |
337 |
gaactgctttcttttgctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagag |
436 |
Q |
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| T |
39167557 |
gaactgctttcttttgctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagag |
39167458 |
T |
|
| Q |
437 |
aaccggagatttggacatgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgac |
536 |
Q |
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| T |
39167457 |
aaccggagatttggacatgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgac |
39167358 |
T |
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| Q |
537 |
caaatttttgtatggcctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttct |
636 |
Q |
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| T |
39167357 |
caaatttttgtatggcctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttct |
39167258 |
T |
|
| Q |
637 |
tgctaactcgcatataaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaa |
736 |
Q |
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| T |
39167257 |
tgctaactcgcatataaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaa |
39167158 |
T |
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| Q |
737 |
ctgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgctt |
791 |
Q |
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| T |
39167157 |
ctgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgctt |
39167103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 39167874 - 39167822
Alignment:
| Q |
20 |
aacaagactgagaaggtcgaagaagtagctcctgaggttagtctccattcata |
72 |
Q |
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| T |
39167874 |
aacaagactgagaaggtcgaagaagtagctcctgaggttagtctccagtcata |
39167822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 357 - 494
Target Start/End: Complemental strand, 43965044 - 43964907
Alignment:
| Q |
357 |
tagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttggacatgc |
456 |
Q |
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| T |
43965044 |
tagattaaggcagctgtttctgcgctttttaatactcgtggcttgaactggcctagtgcattcgagcaaactcgccagagaactggagatttggatctgc |
43964945 |
T |
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| Q |
457 |
ttgattggcttagagcaatatttggcttccaggtatgt |
494 |
Q |
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| T |
43964944 |
ttgattggctcagagccatgtttgggttccaggcatgt |
43964907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 686
Target Start/End: Complemental strand, 43964785 - 43964704
Alignment:
| Q |
605 |
aggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaagg |
686 |
Q |
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| T |
43964785 |
aggaatcagagagagcatctaattttgcttcttgctaacaaccatataaggctacaccccaaacccgagcctctcaacaagg |
43964704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 43965377 - 43965335
Alignment:
| Q |
20 |
aacaagactgagaaggtcgaagaagtagctcctgaggttagtc |
62 |
Q |
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| T |
43965377 |
aacaagactgagaaagtcgaagaagttgctcctgaggttagtc |
43965335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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