View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_61 (Length: 363)
Name: NF11538_low_61
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 29024153 - 29024497
Alignment:
| Q |
1 |
aagaggagaacaagaattttcattaattgtgtgtatatgattatttctacataatttacacgggtatatatagtatatattcgtaggagtgtaaagaata |
100 |
Q |
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| T |
29024153 |
aagaggagaacaagaattttcattaattgtgtgtatatgattatttctacataatttacacgggtatatatagtatatattcgtaggagtgtaaagaata |
29024252 |
T |
|
| Q |
101 |
tgattgtatgcatcatttaaaatatttggcatgactttgtgcggctttatgcaagttttcatttttggttatagctttatgcggcttcgtgcgagtgaca |
200 |
Q |
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| T |
29024253 |
tgattgtatgcatcatttaaaatatttggcatgactttgtgcggcttcatgcaagttttcatttttggttatagctttatgcggcttcgtgcgagtgaca |
29024352 |
T |
|
| Q |
201 |
ttatgtttgtggctttgtgcaaccttcctttgtggtctatacaatataataataataatttggtcccnnnnnnncgtatatattaataattttgccctca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29024353 |
ttatgtttgtggctttgtgcaaccttcctttgtggtctatacaatataataataataatttggtcccaaaaaaacgtatatattaataattttgccctca |
29024452 |
T |
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| Q |
301 |
gaaatttggtgcatgacactcattatccagtatcataatagcaac |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024453 |
gaaatttggtgcatgacactcattatccagtatcataatagcaac |
29024497 |
T |
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