View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_65 (Length: 359)
Name: NF11538_low_65
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 135 - 348
Target Start/End: Original strand, 26909380 - 26909593
Alignment:
| Q |
135 |
agccactgtagccaatcaccgccgcataaaccgccagtgcatgctagcccgccaccgagagccacaacagggaatactgtataaatcgtgggtgattaaa |
234 |
Q |
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| T |
26909380 |
agccgctgtagccaatcaccgccacataaaccgccagtgcatgctagaccgccaccgagagccacaacagggaatactgtataaatcgtgggtgattaaa |
26909479 |
T |
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| Q |
235 |
ttaaactaaatagaatatgtcattcgaaaacaaaatggcacaatggttgaagaagtggactgaccagtacaataaaccaaggcatcagaacataatacta |
334 |
Q |
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| T |
26909480 |
ttaaactaaatagaatatgtcatttgaaaacaaaatggcacaatggttgaaaaagtggactgaccaatacactaaaccaaggcatcagaacataatacta |
26909579 |
T |
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| Q |
335 |
ctgactcggttctt |
348 |
Q |
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| T |
26909580 |
ctatctcggttctt |
26909593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 26909153 - 26909266
Alignment:
| Q |
20 |
acacacaaaccaaaattgtttttcaatggataatatagtatatttatggagattgatttatattaaataatgttgtataactatcacctgatacacataa |
119 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26909153 |
acacacaaaccaaaattgtttttcaatagataatagagtatatttatggagattgatttatattaaataatgttgtataactatcacctgatacacataa |
26909252 |
T |
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| Q |
120 |
cacttctcatgctc |
133 |
Q |
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|||||||||||||| |
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| T |
26909253 |
cacttctcatgctc |
26909266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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